Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g01790 ATGAAAAGAGAAACACCAGATGGAGTAGTTGATTGTGGTGCTAACAAGGGTGCTAACAAGGTCGCTGAGAAGGACCCAAACGACGCTTCTAACTGCACAATTGATGGAGTCACAAATGACGTCGATCGCTCTCTCTCGCACCGGCGCCCTTGGGTCGCTCTCCCTCGCGTTTCTCTCTCCCTCACAGCTGCGCAGACCGAAGGCTCTCTCTTTCTCTGCTCTGGATCTCTAAACAGTCTTCTGGCCGAAAGTACTTGGTCTGTTTCCACCCCTACCATAGTGGGTGCTCTAGAATTTGAAATAGATCTGTTGTCACCTCACTGTGCGATCACTCACTTAATGTCTGGAACTCCTCTCTCCAGTCACAAGCATCACCTCCCCCCCTTAAAATATGTTTTCATGTCCGATTGGTGGCTTGCCAAGCCTTGCCTTCCACTCCAGGGTTTAGCGGTTGGTGGCATTGCTTATGGCCAGAGAGAGAGAATGTTCTTATCGACAGTGATTGCAAAGAGGCACGAGGCGAATGTCTTGGAGACTGAAGACGGAGTCACTCTTCACTTAAGTAGTTTCATTAACAGCTCTCGCTCGTTTCAGAATGGCTTCCCACGTGAGGTATGTGAAGACTTCTTGTTGGGATTTCCAGACGATTGGCAAAAGTACACTGCTCATAGTTTTAGAGCTAAATGTGTCGATGGGCATACTGGATTTTGTGAGCCAAATGCTTCTTTACACAAGAGGGCTATTGATCCTATCCCATTTTCCATTCGTGATCATCGTTCGGCAGAGAGATATGATTTTTCATCGTCCAATGATGGAATTCTCAAAGCAAAAACGAATATCTGCAATGAACCAGAGAATTCAATTGTCAATGTTTTAAAGCAATCCGTATCAAAAAATAGTGTGGAATGCAGTAATAGCAAGAAAACTGTGGAGGGTGAACGCAATGACAATATTGTGAGTCTTAAATCGTCTCAGTCACTTGTTGACACGATGGATGATGGTGAAAATGGAGTCTTAGTAGCTGCACCGATAAGCCAAGTTGTAAATCCAAACAACGATCAATCTTTGACAGGTGTGTTTGACTGGAATCCATGTAAAGTTCATTCTGGGAAAAGCATGGTTGGATCTCCAGTTTCGACAGCGAAAATCAGAGTAACACAATCATCGGGTGACTGCAAGGAGGAACATTCACCGGTCACCGCCACCCTCACAACAACACAGCCGCGAGCTCCGCCATCTTCACAACCGCGAGATCGCGTCTCCTTTTCCTACTCGTCACCGCCTCCAGCAGGTCTTCCAGCAGCCTTCTCAGCCTCTTCGTCTCCGCGTCAACGTCGCCGCATCATCGTCGTTGCGTCATCGTCGCCGCCTCCATCAGTCTCCGTTTCCCATCATCGCCGCCCCCTGCTCCGCGACTGCTCCTTCACGTCGCCGATCTTGTTGCCGCCGCCGACTGCTCCTTCTCGCCGCTGCTACTCAGCACCTTCACGCCGCCGAGCTCTTGTCGCCGCCGCCGTCCACCTCCTCCATTGCAAGGTGTTTTTTGGGCGTTATTACTTTGAGAAGATGCAGCAGACACCCCCAATGATGCCGATGATGCCTTCCTTCCCACCTGCAAACATTACCACTGAGCAGATTCAGAAGTATCTTGATGACAACAAGAAGCTGATTCTGGCAATTTTGGACAATCAAAATCTTGGAAAACTTGCTGAATGTGCCCAGTACCAAGCTCAGCTTCAAAAGAATTTAATGTATTTAGCTGCAATTGCTGATGCCCAGCCACAAACACCAGCTATGCCTGCACAGATGCCCCCACACCCTATGATGCAACCAGGAGGATACTATATGCAACACCCTCAGGCTGCAGCGATGGCTCAGCAACAAGGGTTCTTTGCTCAAAAGATGCCAATGCAATATGGTAACCCACATCAAATGCAGGATCCGCAGCAGCAGCATTTGCACCAGCAGGCCATCCAGGGCCAAATGGGACTGAGACCTGGAGGGATAAATAATGGCATGCATCCACTGCATGGCGAGGCTGGTCTTGGAGGTGGCAGCAGTGGTGGTCAACCTTCAACTGCAGGTCCAAATGATGCACGTGGTGGAAGCAAGCAAGATGCCCTGGAAGCTGGGACAGCAGGTGGAGATGGCCAGGGCAATTCGGCTGCTGCTCATAACAGTGGTGATGGTGAATCACCCTATCTGAAGGGATCAGAAGAAGCCAAGTGA 2229 0.4948 MKRETPDGVVDCGANKGANKVAEKDPNDASNCTIDGVTNDVDRSLSHRRPWVALPRVSLSLTAAQTEGSLFLCSGSLNSLLAESTWSVSTPTIVGALEFEIDLLSPHCAITHLMSGTPLSSHKHHLPPLKYVFMSDWWLAKPCLPLQGLAVGGIAYGQRERMFLSTVIAKRHEANVLETEDGVTLHLSSFINSSRSFQNGFPREVCEDFLLGFPDDWQKYTAHSFRAKCVDGHTGFCEPNASLHKRAIDPIPFSIRDHRSAERYDFSSSNDGILKAKTNICNEPENSIVNVLKQSVSKNSVECSNSKKTVEGERNDNIVSLKSSQSLVDTMDDGENGVLVAAPISQVVNPNNDQSLTGVFDWNPCKVHSGKSMVGSPVSTAKIRVTQSSGDCKEEHSPVTATLTTTQPRAPPSSQPRDRVSFSYSSPPPAGLPAAFSASSSPRQRRRIIVVASSSPPPSVSVSHHRRPLLRDCSFTSPILLPPPTAPSRRCYSAPSRRRALVAAAVHLLHCKVFFGRYYFEKMQQTPPMMPMMPSFPPANITTEQIQKYLDDNKKLILAILDNQNLGKLAECAQYQAQLQKNLMYLAAIADAQPQTPAMPAQMPPHPMMQPGGYYMQHPQAAAMAQQQGFFAQKMPMQYGNPHQMQDPQQQHLHQQAIQGQMGLRPGGINNGMHPLHGEAGLGGGSSGGQPSTAGPNDARGGSKQDALEAGTAGGDGQGNSAAAHNSGDGESPYLKGSEEAK 742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g01790 742 Pfam SSXT protein (N-terminal region) 540 596 IPR007726 -
Aip03g01790 742 MobiDBLite consensus disorder prediction 387 422 - -
Aip03g01790 742 MobiDBLite consensus disorder prediction 663 742 - -
Aip03g01790 742 PANTHER SYNOVIAL SARCOMA ASSOCIATED SS18 PROTEIN 523 707 IPR044779 GO:0003713
Aip03g01790 742 Pfam SANTA (SANT Associated) 132 220 IPR015216 -
Aip03g01790 742 MobiDBLite consensus disorder prediction 387 441 - -
Aip03g01790 742 PANTHER BNAA09G51550D PROTEIN 523 707 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g01790 Aip-Chr3 22216600 22225962 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Aip03g01790 SANTA 1.3e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g01790 - - adu:107478102 547.354