Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g01780 ATGGATCAATTGGGAAGTAGAAGTGAAGCTTCTCCATCTTCAACCAACGACAAGAAGATTGAGAGAAGGCTCATTGAGAAAAAGAGAAGGAAGCACATGAGGATGCTCTACTCCAAACTCAACGCTCTTCTCCCTATCGACCACAACTCCACTAGTCCCAAGGAAGTGTTGCCATTGCCTGATCAAGTGGACAAGGCCATAAACTACATAAAAAACTTAAAGAAGAAGGTGAAGATGGCTAAGGAGAAGAGAGAGAGCTTGTTAGGAATGGGAAGAAAGAGGACACGTGACGCTGGCAGCCGTCGTGATCGCCCCAAACCGCCACAACTTGAGGTTCATGAAATGGGTTCATATCTTCAAATTGTAATGACATGTGGATTAGATTCCCAGTTCATATTCTCTGAAATCATTCGTATTCTGAATGAAGAGAACATTGATGTCAAGAGTGTCAAATCCTCACTCGTCGAAAATTCCATGCACCATGTTATTTATGCAGAGATTTCACAATCTTTGCTTCAATTGGGTGCAACTAAAGTAAGTGAGAGATTGAAAAGGTTTGTGAATGAACCAACCAGTGAAATTGAATTACAATCTGATCATCAGTTATTGGATTTTGAGATTGATACTGATGAATTAGCGGAGCTTCTAGATTTTTTAGAAGAGAAATGA 669 0.4036 MDQLGSRSEASPSSTNDKKIERRLIEKKRRKHMRMLYSKLNALLPIDHNSTSPKEVLPLPDQVDKAINYIKNLKKKVKMAKEKRESLLGMGRKRTRDAGSRRDRPKPPQLEVHEMGSYLQIVMTCGLDSQFIFSEIIRILNEENIDVKSVKSSLVENSMHHVIYAEISQSLLQLGATKVSERLKRFVNEPTSEIELQSDHQLLDFEIDTDELAELLDFLEEK 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g01780 222 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 13 194 - -
Aip03g01780 222 MobiDBLite consensus disorder prediction 1 27 - -
Aip03g01780 222 Gene3D - 9 98 IPR036638 GO:0046983
Aip03g01780 222 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 13 194 IPR015660 GO:0003700|GO:0006357
Aip03g01780 222 Pfam Helix-loop-helix DNA-binding domain 19 73 IPR011598 GO:0046983
Aip03g01780 222 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 17 73 IPR011598 GO:0046983
Aip03g01780 222 MobiDBLite consensus disorder prediction 81 109 - -
Aip03g01780 222 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 15 88 IPR036638 GO:0046983
Aip03g01780 222 Coils Coil 63 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g01780 Aip-Chr3 22042932 22044304 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g01780 12 188 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 33.508 4.73e-26 98.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aip03g01780 HLH 1.9e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g01780 - - adu:107478214 230.335