Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g01777 ATGAATGGTGACTCATTCGACCTTACTGATGCTGATAATAAGGCTCTATCGAAAGTTGCTGAGAAATTGGAGCTAAAGGTGATGATTGAGGAAATGGAATCTTCAACAAGAATTGATGATGCTCCCACGGTGTTCATTTGTCCAATTTCACTTGAGCCAATGCAAGAGCCAGTAACACTTTCAACTGGCCAAACCTATGAAAGATCCAACATCGTCAAATGtctctgggtatctcacctcgtcacgctctcgttctctcactgtgagtccgtgaccctacgttcgcttcgtcgggtggtggtggtcgtcatcttctcaactag 323 0.2786 MNGDSFDLTDADNKALSKVAEKLELKVMIEEMESSTRIDDAPTVFICPISLEPMQEPVTLSTGQTYERSNIVKCLWVSHLVTLSFSHCESVTLRSLRRVVVVVIFST 107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g01777 107 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 34 97 IPR013083 -
Aip03g01777 107 SMART Ubox_2 44 100 IPR003613 GO:0004842|GO:0016567
Aip03g01777 107 PANTHER WDSAM1 PROTEIN 14 77 IPR045185 GO:0061630
Aip03g01777 107 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 30 14 77 - -
Aip03g01777 107 ProSiteProfiles U-box domain profile. 40 107 IPR003613 GO:0004842|GO:0016567
Aip03g01777 107 SUPERFAMILY RING/U-box 32 79 - -
Aip03g01777 107 Pfam U-box domain 42 75 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g01777 Aip-Chr3 22013365 22020314 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g01777 8 79 U-box Gene Family AT5G65920 56.000 4.94e-19 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g01777 - - tcc:18591947 85.1149