Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g01764 ATGGATCGTGGAAGTCAACCCTCATCTTCAACCACCAACAAGATTGAAAGAAGGCTCATTGAGAAAAACAGAAGGAACCACATGAAGATGCTTTACTCCAAACTCAACTCTCTTCTCCCTAACTATAACCCCAAGGAAGCGTTGCCACTGCCGGATCAAGTGGACGAAGCTATAAACTACATAAAGAGCTTAGAGGAGAAGGTGAAGACAGCGAAGGAAAAGAAAGAGGACTTATTGGAAAGAATGGGAAGGAAAAGGACACGTGGCAGTGGCGGTGGCGGCGATGGTAGTGGTTGCAGCAACACGAAACCGCCACAACTTGAAATTCATGAAACTGGTTCATGTCTTGAAATTGTAATGACATGCGGGTTAGACAACCAGTTCATATTCTATGAAATAATTCGCATACTCAATGAAGAGAACATCGATGTTAAGAGTGCTAATTCCTCACTCCTCGGAGATTCCAATATATTAATTCCTCAGCTATTGATTCAATTTGGGGCGACTAAAGTGAGTGAGAGATTGAAAAGGTTTGTGAATGGATCAGCCAGTGATATTGAATTATTGCAACCAGAGTTCTGGGATTTAGAGATTGACACTGATATCTGGAGCTTCTAG 618 0.4223 MDRGSQPSSSTTNKIERRLIEKNRRNHMKMLYSKLNSLLPNYNPKEALPLPDQVDEAINYIKSLEEKVKTAKEKKEDLLERMGRKRTRGSGGGGDGSGCSNTKPPQLEIHETGSCLEIVMTCGLDNQFIFYEIIRILNEENIDVKSANSSLLGDSNILIPQLLIQFGATKVSERLKRFVNGSASDIELLQPEFWDLEIDTDIWSF 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g01764 205 MobiDBLite consensus disorder prediction 72 88 - -
Aip03g01764 205 MobiDBLite consensus disorder prediction 72 104 - -
Aip03g01764 205 Gene3D - 3 89 IPR036638 GO:0046983
Aip03g01764 205 SMART finulus 18 70 IPR011598 GO:0046983
Aip03g01764 205 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 12 64 IPR011598 GO:0046983
Aip03g01764 205 Pfam Helix-loop-helix DNA-binding domain 15 65 IPR011598 GO:0046983
Aip03g01764 205 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 11 83 IPR036638 GO:0046983
Aip03g01764 205 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 8 186 IPR015660 GO:0003700|GO:0006357
Aip03g01764 205 MobiDBLite consensus disorder prediction 1 22 - -
Aip03g01764 205 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 8 186 - -
Aip03g01764 205 Coils Coil 54 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g01764 Aip-Chr3 21854571 21855684 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g01764 6 181 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 36.898 4.13e-31 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aip03g01764 HLH 4e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g01764 - - gmx:100817883 248.054
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g01764 03 21854571 21855684 Aip03g01764 03 21854571 21855684 ECH
Aip08g00923 08 10380635 10382182 Aip03g01764 03 21854571 21855684 PCT