Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g01741 ATGACCTCAGATCAGTACTTCAGGGATGCTGCTCGCGAAATCAGTACCTTGGAAGACATACCCTCCTTGGAAAAGTGGAAATCTTCCACCAATGCTGGTGTAGATTCCGATCGAAATGCCACCGAAGGATTCGACTGCAACATCTGCCTAGAATGTGTGCAAGAACCGGTAGTTACCCTTTGCGGCCATCTCTACTGCTGGCCCTGCATTTACAAATGGCTCCATATCCAAACCATCTCTTCCAAAAACATGGAGCAGCAGAAGCCACAATGTCCTGTGTGCAAATCAGAAGTTTCTCAATCCTCCCTAGTTCCACTCTACGGCCGGAACCAAGTCGCAACGCCGTCCGGGAAAAATGCTCGCCAATCAGGCTCTTCAATACCTAGAAGACCCCCTGGCCGGAGACCATACAATCCTGCAGCATCTGTTTTACAGTCTACTTCTCAAACTAATCAACCTCGACCATTCGACTCGATTCAAAGCAGTTACACTTCAACATCTGGAATTTTTGGTGAGATGATATATGCAAGGGTGTTTGGTAATCAATTGAGAAACATGTATACATATCCAAATTCTTATTGTCTTTCAGGGAGTAGTAACCCAAGGATCAGAAGGCAATTAATGGAAGCTGATGAATCACTCAGTAGAATATGTTTTTTCCTCTTCTGCTGCTTGGTTATGTGTCTTCTCTTGTTCTGA 699 0.4492 MTSDQYFRDAAREISTLEDIPSLEKWKSSTNAGVDSDRNATEGFDCNICLECVQEPVVTLCGHLYCWPCIYKWLHIQTISSKNMEQQKPQCPVCKSEVSQSSLVPLYGRNQVATPSGKNARQSGSSIPRRPPGRRPYNPAASVLQSTSQTNQPRPFDSIQSSYTSTSGIFGEMIYARVFGNQLRNMYTYPNSYCLSGSSNPRIRRQLMEADESLSRICFFLFCCLVMCLLLF 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g01741 232 Pfam RING-type zinc-finger 46 92 IPR027370 -
Aip03g01741 232 SUPERFAMILY RING/U-box 37 101 - -
Aip03g01741 232 ProSiteProfiles Zinc finger RING-type profile. 46 95 IPR001841 -
Aip03g01741 232 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RMA1 3 232 - -
Aip03g01741 232 SMART ring_2 46 94 IPR001841 -
Aip03g01741 232 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 3 232 IPR045103 GO:0005783|GO:0006511|GO:0061630
Aip03g01741 232 ProSitePatterns Zinc finger RING-type signature. 61 70 IPR017907 -
Aip03g01741 232 MobiDBLite consensus disorder prediction 111 126 - -
Aip03g01741 232 MobiDBLite consensus disorder prediction 111 158 - -
Aip03g01741 232 CDD RING-HC_AtRMA_like 44 96 - -
Aip03g01741 232 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 126 IPR013083 -
Aip03g01741 232 MobiDBLite consensus disorder prediction 140 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g01741 Aip-Chr3 21428902 21431870 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g01741 44 232 C3H Transcription Factor Family AT4G28270 42.784 6.54e-47 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g01741 K10666 - gmx:100785491 255.373
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g01741 03 21428902 21431870 Aip03g01741 03 21428902 21431870 ECH