Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g01719 ATGGCTGCTTCTGCTGCAAGGAACAGTGGTAAATCCACAAAGGATGCTGTTGTTGAAGATTCTCATCATCAAAGGGTAATTGCTGAAAGTGGAAGCCAACAAGATTTGGAGATGATGATGATGGATAAGGGAAAAGGCGTTGAGAGGCGGCAATGGAAGCCAGTTTTTGATGAAGCTTCCATGTCAACCAGGCCTCATAAAAAGATTAATCAATCACCACCATCACCATCATCGTCATTTTTAAAACAACAACCACCTCATTTTTCTTCCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCAAGAATAGTGTTCCCTTTTGCATTTGAAGGCTCTCAAACTCAGAATCAAGCAATGCAATTCCCACACCAATTTGGAACCACAAACATGCCTCTCTTCCATCCACCACCACCACAAATTCAGCCATCACAACTACCATTACATCAAAACATGATATCTTTTGGGTCTCAACACCAACAACACCTTCAAAATCTTCAGTATTGGAGTGACACACTGAATCTAAGTCCAAGAGGGAGAGCCATGGCCATGATGAACAACAGAATAGGGCCTGATGGAAGGCCATTGTTTTCGCCTTCACCTCCGGTGCCTTTGAATGCTACAAAGCTCTATAGAGGTGTGAGGCAGCGCCATTGGGGGAAATGGGTAGCAGAGATTCGCCTCCCTCGCAATAGGACTCGCCTATGGCTTGGGACATTCGACACGGCTGAGGACGCCGCCATGGCCTATGACCGCGAGGCCTTCAAGCTTAGAGGGGAGAATGCTAGGCTAAATTTCCCTGAGCTCTTTCTCAACAAGGAGAAAGATCAATCAACAAAAATGGCACAAGATTCTTCTTCTTCTTCTGCTTCGGCATCAAAGGTACCAGAGGCAGAGCAGCCAGAGCCAGAGCCGGAGCCAGAAGAAGACATCACTATGCAGCAGGATTTGAACACTGAGAGCGTGCCGCCGCCGCCAGCGCCACCATTGCCTCCGGCTTCAATGATTGATGACAATGCTGATAATGATTCAGGAGCTCCGCAGTCTCAGGAGTTGGTTTGGGGGGAAATGGCTGCTTGGTTTAATGCAATTCCTGCAGCTTGGGGTCCTGGTAGTCCTGTGTGGGATGATTTGGACTCAAACAACAATCTTCTGTTTCAATCACAAATTCCATTTATGAATCACAATCAGCAAGAATTCAATGACGATGATGATCCTGAAGCTCATAGAACAATAGAAGGAGATAATAACAGAAAACCAGGTTCTTCTTCCTCTTCTTCTTGCCCTGTTAGACCCTTCTTCTGGAAGGATCAAGATTGA 1314 0.4581 MAASAARNSGKSTKDAVVEDSHHQRVIAESGSQQDLEMMMMDKGKGVERRQWKPVFDEASMSTRPHKKINQSPPSPSSSFLKQQPPHFSSSSSSSSSSSSRIVFPFAFEGSQTQNQAMQFPHQFGTTNMPLFHPPPPQIQPSQLPLHQNMISFGSQHQQHLQNLQYWSDTLNLSPRGRAMAMMNNRIGPDGRPLFSPSPPVPLNATKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEDAAMAYDREAFKLRGENARLNFPELFLNKEKDQSTKMAQDSSSSSASASKVPEAEQPEPEPEPEEDITMQQDLNTESVPPPPAPPLPPASMIDDNADNDSGAPQSQELVWGEMAAWFNAIPAAWGPGSPVWDDLDSNNNLLFQSQIPFMNHNQQEFNDDDDPEAHRTIEGDNNRKPGSSSSSSCPVRPFFWKDQD 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g01719 437 MobiDBLite consensus disorder prediction 1 99 - -
Aip03g01719 437 PRINTS Ethylene responsive element binding protein signature 209 220 IPR001471 GO:0003700|GO:0006355
Aip03g01719 437 PRINTS Ethylene responsive element binding protein signature 231 247 IPR001471 GO:0003700|GO:0006355
Aip03g01719 437 MobiDBLite consensus disorder prediction 65 99 - -
Aip03g01719 437 MobiDBLite consensus disorder prediction 415 429 - -
Aip03g01719 437 MobiDBLite consensus disorder prediction 396 414 - -
Aip03g01719 437 MobiDBLite consensus disorder prediction 279 293 - -
Aip03g01719 437 CDD AP2 207 267 IPR001471 GO:0003700|GO:0006355
Aip03g01719 437 Pfam AP2 domain 209 257 IPR001471 GO:0003700|GO:0006355
Aip03g01719 437 MobiDBLite consensus disorder prediction 273 345 - -
Aip03g01719 437 MobiDBLite consensus disorder prediction 390 437 - -
Aip03g01719 437 MobiDBLite consensus disorder prediction 41 64 - -
Aip03g01719 437 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 7 434 - -
Aip03g01719 437 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF053 7 434 - -
Aip03g01719 437 SMART rav1_2 208 271 IPR001471 GO:0003700|GO:0006355
Aip03g01719 437 Gene3D AP2/ERF domain 208 266 IPR036955 GO:0003700|GO:0006355
Aip03g01719 437 SUPERFAMILY DNA-binding domain 208 266 IPR016177 GO:0003677
Aip03g01719 437 ProSiteProfiles AP2/ERF domain profile. 208 265 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g01719 Aip-Chr3 20980488 20982826 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g01719 39 377 AP2-EREBP Transcription Factor Family AT4G28140 42.857 1.96e-56 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Aip03g01719 AP2 2.9e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g01719 - - adu:107477889 812.372
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g01719 03 20980488 20982826 Aip03g01719 03 20980488 20982826 ECH