Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g01664 ATGGGAAGAGTTCCTTGTTGTGACAAGAATGGTCTCAAGAAGGGTCCATGGACCCCGGAGGAAGATCTTAAACTTACCAACTACATTCAGACTCATGGCCCAGGAAATTGGCGCACCCTTCCCAAGAATGCTGGCCTTCAAAGATGTGGCAAGAGTTGTCGCCTAAGATGGACAAATTACCTGAGACCCGATATCAAGAGGGGAAGATTCTCTTTTGAAGAAGAGGAGGCTATTATTCAGTTGCATAGTGTATTGGGAAACAAATGGTCGGCAATAGCAGCAAGACTTCCAGGAAGAACTGACAACGAAATCAAGAACTATTGGAACACTCACATTAGGAAGAGGCTACTTCGGATGGGAATTGACCCAATTACCCATGCCCCACGCCTTGATCACCTTCTTGATGTGTCCTCCATTCTAAGGACACTCATTGCAAACCCTTCTTCTCTTCTGAGTCTCCAAGCCCTATTAACTCACCCTCAACCCTTTTTATTCAACCCTGAATTGCTTAAGCTATTAGCAGCTGCTACTACAACTCCTTCAACTCTTATGTCCACAAAAAATGACCAAAATAACCCTGATTTTGCATCGTCATCCTCATCTTCGTCGCAGAATATTAATAACAATAATAATGATATTCTACAACAAATCCTTGGTGGGAAGCTCAATCAGTTAGTTGCACCAAAAGAAGAGTTTGTTACTCATGGTCATTTTGAGACACCAATTTCAACAATTCAATGTAATGTGGAGGGCTTAATGGAAAATAATAATAATAATTTTAATGTTTTGCAACAAGATCAAGTTGGTTTCATAGGGAACCAGGATTTGGACAATAATAATATTGCAAACCAAAATAGTTTTGGTTATGATTCGGTGCTGTCAAGTCCAAATCAGATGAATTCATCATCCACCTATGTGAATAGCAGTGCGGAGGAAGAAAGCTATTGCAGTGAATTATTCAAGTTTCAGATTCCAGACACTCTGGATATTAGTGATTTTATGTAA 1005 0.401 MGRVPCCDKNGLKKGPWTPEEDLKLTNYIQTHGPGNWRTLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFSFEEEEAIIQLHSVLGNKWSAIAARLPGRTDNEIKNYWNTHIRKRLLRMGIDPITHAPRLDHLLDVSSILRTLIANPSSLLSLQALLTHPQPFLFNPELLKLLAAATTTPSTLMSTKNDQNNPDFASSSSSSSQNINNNNNDILQQILGGKLNQLVAPKEEFVTHGHFETPISTIQCNVEGLMENNNNNFNVLQQDQVGFIGNQDLDNNNIANQNSFGYDSVLSSPNQMNSSSTYVNSSAEEESYCSELFKFQIPDTLDISDFM 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g01664 334 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Aip03g01664 334 CDD SANT 69 112 IPR001005 -
Aip03g01664 334 SMART sant 66 114 IPR001005 -
Aip03g01664 334 SMART sant 13 63 IPR001005 -
Aip03g01664 334 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Aip03g01664 334 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Aip03g01664 334 CDD SANT 16 61 IPR001005 -
Aip03g01664 334 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Aip03g01664 334 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Aip03g01664 334 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 329 - -
Aip03g01664 334 MobiDBLite consensus disorder prediction 183 209 - -
Aip03g01664 334 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Aip03g01664 334 PANTHER TRANSCRIPTION FACTOR MYB41 1 329 - -
Aip03g01664 334 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Aip03g01664 334 Gene3D - 13 66 - -
Aip03g01664 334 Gene3D - 69 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g01664 Aip-Chr3 19931078 19934082 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g01664 1 334 MYB Transcription Factor Family AT4G21440 46.933 1.67e-98 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aip03g01664 Myb_DNA-binding 1.5e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g01664 K09422 - gmx:102668351 371.318
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g01664 03 19931078 19934082 Aip03g01664 03 19931078 19934082 ECH
Aip08g00838 08 8957531 8958650 Aip03g01664 03 19931078 19934082 PCT