Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g01654 ATGGGAAATGTTGTGATTTGGTTTCAGATACATGAAGAGGCTAGGAAGTTTGCATATCAAACAGGGGTTAAGGTGGTTGTTGCTTATGGCGGAGCTCCAATAAACCATCAGCTACGAGATCTTGAGAAGGGGGTGGACATTCTCGTCGCAACTCCTGGAAGACTGGTAGATTTGCTGGAGAGAGCTAGAGTTTCACTTCAGATGATCAGATATCTTGCACTAGATGAGGCAGATAGGATGCTAGATATGGGTTTTGAGCCACAAATAAGGAAGATTGTTGAACAAATGGATATGCCCCTCCAGGTGTAA 309 0.4401 MGNVVIWFQIHEEARKFAYQTGVKVVVAYGGAPINHQLRDLEKGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPLQV 102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g01654 102 Gene3D - 6 101 IPR027417 -
Aip03g01654 102 Pfam DEAD/DEAH box helicase 8 97 IPR011545 GO:0003676|GO:0005524
Aip03g01654 102 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 8 100 - -
Aip03g01654 102 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 102 IPR014001 -
Aip03g01654 102 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 7 98 IPR027417 -
Aip03g01654 102 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 52C 8 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g01654 Aip-Chr3 19697903 19698654 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g01654 9 102 Eukaryotic Initiation Factors Gene Family AT1G72730 38.298 5.93e-14 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g01654 K11594 - aip:107607056 193.356