Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g01651 ATGGTGAGAGCTCCTTTCTATGACAAATATGGAGTGAAGAAAGGTGCATGGAGTAGAGAAGAGGATCAAAGATTAATAGCTTTTGTTCAAAGATATGGTCATTCTAATTGGCGTCAGCTCCCAAAGTTTGCAGGTTTAGCAAGGTGTGGGAAAAGTTGCAGACTTCGCTGGTTGAATTACTTGAGGCCAAATCTAAAACATGGGAACTACACCCAAGAGGAAGAAGAATTAATAATCAAATTACACCAAGAATTAGGAAATAGATGGTCTCTGATTGCTGAAAATCTACCTGGAAGAACAGACAACGAGATCAAGAACTATTGGCATAGCCACCTGAAGAAGTTCCAAAACTGCAATGTGAACAACACATCAAGTGATGATGATGATGATGATGATTTGAACAAGTCCAAGTCTTCTTCTCAGAATACCAAAGAACATGAAAGACCAAAAAGTGAAGTCCTTACTTTTACTACTGATGATGATAACGATGATGATTCACACCATATCTTGGAAAGTTCGTTGTCCAATGTGACAACCGAGTCTTCCTATTCATACACTGAAGAAGAAGAAGACAACAAGGGCAACAACAACAACAACAACGCATGGCTCTGCTTTTCCTCTGGTCATGAAGAAGAATCAAATAGGGAAGAAGATAGGTTTGCTTCGTGGGGTGCAACAACTTTGTTTGATGAGTTTGGTTCCAGTTTTTGGACTGAACCATTTATTTCAGATGATGCTTTTAGTCAAGATTACAATTACATTTTGTATGATAGAGAAGATCCTTTTTTCATTTGA 795 0.3811 MVRAPFYDKYGVKKGAWSREEDQRLIAFVQRYGHSNWRQLPKFAGLARCGKSCRLRWLNYLRPNLKHGNYTQEEEELIIKLHQELGNRWSLIAENLPGRTDNEIKNYWHSHLKKFQNCNVNNTSSDDDDDDDLNKSKSSSQNTKEHERPKSEVLTFTTDDDNDDDSHHILESSLSNVTTESSYSYTEEEEDNKGNNNNNNAWLCFSSGHEEESNREEDRFASWGATTLFDEFGSSFWTEPFISDDAFSQDYNYILYDREDPFFI 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g01651 264 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Aip03g01651 264 CDD SANT 69 112 IPR001005 -
Aip03g01651 264 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Aip03g01651 264 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Aip03g01651 264 CDD SANT 16 61 IPR001005 -
Aip03g01651 264 Pfam Myb-like DNA-binding domain 68 112 IPR001005 -
Aip03g01651 264 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Aip03g01651 264 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Aip03g01651 264 SMART sant 66 114 IPR001005 -
Aip03g01651 264 SMART sant 13 63 IPR001005 -
Aip03g01651 264 MobiDBLite consensus disorder prediction 130 170 - -
Aip03g01651 264 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 257 - -
Aip03g01651 264 PANTHER MYB TRANSCRIPTION FACTOR 1 257 - -
Aip03g01651 264 MobiDBLite consensus disorder prediction 123 199 - -
Aip03g01651 264 Gene3D - 69 114 - -
Aip03g01651 264 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Aip03g01651 264 Gene3D - 13 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g01651 Aip-Chr3 19666832 19687977 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g01651 1 165 MYB Transcription Factor Family AT2G31180 54.706 1.67e-60 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aip03g01651 Myb_DNA-binding 3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g01651 K09422 - gmx:100781032 273.478
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g01651 03 19666832 19687977 Aip03g01651 03 19666832 19687977 ECH