Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g01649 ATGGTTAGAACACCTTCTTGTGACAAGAGTGGATTGAGGAAAGGAACTTGGACTCCTGAGGAAGATAGGAAGTTAATTGCCTATGTTACTAGGTATGGTAGCTGGAATTGGCGCCAATTGCCTAAGTTTGCAGGACTGGCTAGGTGTGGGAAAAGTTGTAGATTGAGGTGGATGAATTACCTAAGGCCTAATCTCAAAAGAGGGAACTTCACTCAAGAGGAAGAAGCTTGCATAATCAAATTGCATTCTAAACTTGGAAATAGATGGTCTGCCATTGCTGCGGAACTACCTGGAAGAACTGATAACGAAATCAAGAACCATTGGCACACCACACTCAAGAAGCGCTTCCAAACCAATGAAGAAGAATCCGAAACCGCCACCAAATCCAAACCCAAAGAAACTACTCAGATCTCAGCAGAGAGCAACACTACTACTACTTCACCATTATCACCATTGTCATCTTCAAGTGAATTTTCCTCCATAACTTCCTGGGATCAAAGTCACAATAATAATAATAAGAACAATATGGTTCTTGAAGACGACGATTTCGCTTTTCTGGATGGAAGTTTCTGGACAGAACCATATCTTGCTGAAATCTTGTATGAATAA 609 0.4105 MVRTPSCDKSGLRKGTWTPEEDRKLIAYVTRYGSWNWRQLPKFAGLARCGKSCRLRWMNYLRPNLKRGNFTQEEEACIIKLHSKLGNRWSAIAAELPGRTDNEIKNHWHTTLKKRFQTNEEESETATKSKPKETTQISAESNTTTTSPLSPLSSSSEFSSITSWDQSHNNNNKNNMVLEDDDFAFLDGSFWTEPYLAEILYE 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g01649 202 CDD SANT 69 112 IPR001005 -
Aip03g01649 202 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Aip03g01649 202 CDD SANT 16 61 IPR001005 -
Aip03g01649 202 Gene3D - 6 66 - -
Aip03g01649 202 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Aip03g01649 202 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 181 - -
Aip03g01649 202 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Aip03g01649 202 PANTHER MYB-RELATED TRANSCRIPTION FACTOR 1 181 - -
Aip03g01649 202 MobiDBLite consensus disorder prediction 115 163 - -
Aip03g01649 202 MobiDBLite consensus disorder prediction 115 129 - -
Aip03g01649 202 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Aip03g01649 202 MobiDBLite consensus disorder prediction 130 163 - -
Aip03g01649 202 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Aip03g01649 202 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Aip03g01649 202 SMART sant 13 63 IPR001005 -
Aip03g01649 202 SMART sant 66 114 IPR001005 -
Aip03g01649 202 Gene3D - 69 142 - -
Aip03g01649 202 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g01649 Aip-Chr3 19580169 19580983 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g01649 1 193 MYB Transcription Factor Family AT2G31180 53.608 3.77e-67 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aip03g01649 Myb_DNA-binding 4e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g01649 K09422 - gmx:778184 275.404
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g01649 03 19580169 19580983 Aip03g01649 03 19580169 19580983 ECH
Aip08g00832 08 8891897 8893423 Aip03g01649 03 19580169 19580983 PCT