Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g01636 ATGATGAAGAAGTGCGAACTGTGCAAGGTTAGGGCTAGGACTTTCTGCGAGTCGGACCAGGCTAGCTTATGCTGGACCTGCGACGCTAATGTTCACGGTGCTAACTTCCTTGTGGCTAAGCACTCCAGGACGCTCCTCTGCCGCGACTGTTACTCACTTACGCCGTGGAAAGCCACCGGCGCCGCACTCCTTAACGCCGTTTCCCTCTGCCACAGTTGTTCCAAGGGAGAACAAGAAAAACCAAAAGAAGAAGAGAGCGAAGGGGAAAATAACGACGAGACAGAAATCGAAGACGACGACGACGACGACGGTTTCGAAGATGTGGACGGAGAAAATCAGGTTGTGCCTTGGTGCTCTTCCACCACCCCGCCGCCTCCGCCGTCGAGTTCCGCCGGCAGCGAAGAGTCCGGGTTCGGCGCTGGAGATGGTTTTGACCTGGCGACGTCGTTGAAACGACGGCGTGACGTCGACGCTTCGGATCGTGACCTTCAGGAAGCCTCGAACGCTTCGATTTGTGAGCGGCGGAGGGTGGCAGAGGACCACCACTGA 549 0.5701 MMKKCELCKVRARTFCESDQASLCWTCDANVHGANFLVAKHSRTLLCRDCYSLTPWKATGAALLNAVSLCHSCSKGEQEKPKEEESEGENNDETEIEDDDDDDGFEDVDGENQVVPWCSSTTPPPPPSSSAGSEESGFGAGDGFDLATSLKRRRDVDASDRDLQEASNASICERRRVAEDHH 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g01636 182 MobiDBLite consensus disorder prediction 88 109 - -
Aip03g01636 182 MobiDBLite consensus disorder prediction 147 182 - -
Aip03g01636 182 PANTHER - 2 179 - -
Aip03g01636 182 CDD Bbox1_BBX-like 4 46 - -
Aip03g01636 182 MobiDBLite consensus disorder prediction 77 182 - -
Aip03g01636 182 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 2 179 - -
Aip03g01636 182 ProSiteProfiles Zinc finger B-box type profile. 1 46 IPR000315 GO:0008270
Aip03g01636 182 Pfam B-box zinc finger 3 43 IPR000315 GO:0008270
Aip03g01636 182 SMART bboxneu5 1 46 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g01636 Aip-Chr3 19253541 19254783 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g01636 1 125 C2C2-CO-like Transcription Factor Family AT4G27310 41.463 4.46e-30 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Aip03g01636 zf-B_box 2e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g01636 - - gmx:100809520 149.828
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g01636 03 19253541 19254783 Aip03g01636 03 19253541 19254783 ECH
Aip08g00821 08 8544741 8546719 Aip03g01636 03 19253541 19254783 PCT