Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g01626 ATGATTCAACCTCAAACCCATTTGAATGTAGCCGATAACAGCGGAGCCCGCCAATTGATGTGTATTCGAATCATAGGAGCAGGTAATCGACGATATGCTTCTATTGGTGACATTGTTGTTGCTGTAATCAAGGAAGCGGTACCAAATATGTCTTTAGAAAGATCAGAAGTGATTAGAGCTGTAATTGTACGTACTTGTAAAGAACTTAAACGTAGCAATGGCATGATAATACAGTATGATGATAATGCCGCGGTTGTCATTGTGAGAATTTTAGGGGGGATGGAAATTGTCATTATTTCTACTTCGAGAGTCCAAGGGGGAACGAAGAGAAATGTTGTGATGAAAGAGCATGACCTAGGGCGGCGCAGCATTGCGACGGAGGCATGGGTGTGGCGTCGAGGTGGCGGCGAGATGAAAACGCTGTCTCCGCCAGCTGAATGCTACGCTGGACTGCTTCGTGCCGGCATCACAGGGAAGGCAGCGATGAGGGCTCACCGTAGCTACAACGGTGTATTAGGTGTGGTGAAGATAGGATTTAGGGTAAGTAAAATTGGAAGTAGATAA 564 0.4592 MIQPQTHLNVADNSGARQLMCIRIIGAGNRRYASIGDIVVAVIKEAVPNMSLERSEVIRAVIVRTCKELKRSNGMIIQYDDNAAVVIVRILGGMEIVIISTSRVQGGTKRNVVMKEHDLGRRSIATEAWVWRRGGGEMKTLSPPAECYAGLLRAGITGKAAMRAHRSYNGVLGVVKIGFRVSKIGSR 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g01626 187 ProSitePatterns Ribosomal protein L14 signature. 60 86 IPR019972 -
Aip03g01626 187 Hamap 50S ribosomal protein L14 [rplN]. 1 124 IPR000218 GO:0003735|GO:0005840|GO:0006412
Aip03g01626 187 SMART Ribosomal_L14_2 1 104 IPR000218 GO:0003735|GO:0005840|GO:0006412
Aip03g01626 187 PANTHER 50S RIBOSOMAL PROTEIN L14, CHLOROPLASTIC 1 90 - -
Aip03g01626 187 SUPERFAMILY Ribosomal protein L14 1 87 IPR036853 GO:0003735|GO:0005840|GO:0006412
Aip03g01626 187 Pfam Ribosomal protein L14p/L23e 1 88 IPR000218 GO:0003735|GO:0005840|GO:0006412
Aip03g01626 187 Gene3D Ribosomal protein L14 1 119 IPR036853 GO:0003735|GO:0005840|GO:0006412
Aip03g01626 187 PANTHER 50S/60S RIBOSOMAL PROTEIN L14/L23 1 90 IPR000218 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g01626 Aip-Chr3 19047933 19050182 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g01626 8 87 Cytoplasmic Ribosomal Protein Gene Family AT1G04480 36.905 2.28e-11 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g01626 K02874 - csin:14412462 159.844