Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g01619 ATGATGAAGGAACTTGAGAACAAAGCCAAAGAGACATTCTTGGATGACGATTTTGCCCTCGCCGTAGATTACTACTCAGAAGCCATCAACTTGGATCCCAACAACCCTCTTCTTTATGCCGACAGAGTCCAAGCCCATATCAAGCTCCAGAACTTCACAGAAGCCGTTTCTGATGCGAACAAAGCCATTCAATTGAGTCCTTCTACCTTGCTAAGGGAACTGCGTGCATTAAGCTGGAAGAGTATCAAACTGCAAAGGTAG 261 0.4521 MMKELENKAKETFLDDDFALAVDYYSEAINLDPNNPLLYADRVQAHIKLQNFTEAVSDANKAIQLSPSTLLRELRALSWKSIKLQR 86
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g01619 86 SUPERFAMILY TPR-like 2 68 IPR011990 GO:0005515
Aip03g01619 86 SMART tpr_5 2 35 IPR019734 GO:0005515
Aip03g01619 86 SMART tpr_5 36 69 IPR019734 GO:0005515
Aip03g01619 86 ProSiteProfiles TPR repeat profile. 2 35 IPR019734 GO:0005515
Aip03g01619 86 Gene3D Tetratricopeptide repeat domain 1 81 IPR011990 GO:0005515
Aip03g01619 86 PANTHER PROTEIN SGT1 HOMOLOG A 1 75 - -
Aip03g01619 86 ProSiteProfiles TPR repeat profile. 36 69 IPR019734 GO:0005515
Aip03g01619 86 PANTHER PROTEIN SGT1 HOMOLOG 1 75 IPR044563 GO:0051087
Aip03g01619 86 Pfam Tetratricopeptide repeat 17 35 IPR019734 GO:0005515
Aip03g01619 86 Pfam Tetratricopeptide repeat 39 68 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g01619 Aip-Chr3 18833855 18834115 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g01619 1 65 U-box Gene Family AT3G07370 36.923 3.59e-10 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g01619 K12795 - aip:107627523 122.864