Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g01604 ATGAGTTTTAGTGAAAACATAATTACACTTGCATTGTATTATTGTCCTTCAGCAGCTTTAGCATATCCACCTAGGAGGGTGGAAGTCTTCCACGCCGGAGACAGAAGCAGCAGGTCCCCGGACTTCCTCCTCGCCTTCAGCAGCTTCTCGGCTTCCTTCGCACAACCTGGTCCCAATTTGGGTGCAATGGATGTTGACTCGGAACCACTCAGTTCACAAGAGAACGTCGAAGATTGCATGATGAATGGTGTGGAAGAAAATGTTAACTGCACTTGTGATTGCGGTGGCAGCAGTAGTAAGTGTGTGTCTGTGACGGCCGATGATATTATAAACCAGACCTTTGAAACATCGGATGCAGCTTATAACTTGTATGTACGTTATGCGAGGTGTCTCGGGTTTGGAGTTCGCAAGGGTGATACAGCACGTGGAAAAGATGGAACACAGCGCAGAAGGAGGTTTTTTTGCAGCAAGGAAGGAAAGAGAGCCGAGAAATACATATCTAGTTTGAGTAGGAAGAGGGAGCATAGAGCGCTGACTCGCACTGGTTGTGAAGCCATGCTTGCGGTGTATCTTGACACTAAAACTTCGACTTGGAGGGTTAAAAAATTAGTTGAGAAGCACAACCACGATCTTGTCCCAAAATGCTTGGTACACCTAATTCCAAACCATCGAGGGTTGACTGAGCCACAAAAAGCTCAGGCGAATACCATGCATGATCATGGTCTTCCAACCTCTAAAATAATGGGACTAATGGTAGGCCAAGCCGGTGGTTATGCCAATGTCGGGTTCACAAAGAAGGACCTAGATAATCACTTTCAAAGAACTCGTCGTGCAAAGCTCATTGGTGGGGATTCCAATGCGACGATTAGCTATCTACTTGGGAAAGCAGATGTCGACCCGATGGCCATGGTAAGGTACAGTGCTACTGATGAAGGTCGGCTGGCAAGTTTATTTTGGGCAGATGGCATTTGTAGGTCCGATTATCAGTGCTTTGGAGATGTGCTTGCATTCGATACAACCTACCGGAAGAATAAGTACAGAAGGCCGTTGGTAATCTTCTCAGGTTATAACCATCACCGCCAAACATGTATATTTGGTTTTGCCTTGGTAGAGGACGAACGGACAGCAACATATACATGGTTGTTGCAAAACTTTCTAGAAGTCATGCTGAACAAGTCTCCCAGTGTTGTGGTCACAGATGGTGACGAAGCAATGAAGGCAGCAATTCGAGAAATCTTCCCGGATGCAACTCACCGATTATGTGGTTGGCACATTCAGAAGAATGTAACGGCAAAAATAAAAAACAAAAAATTTTCCAACGACTTCAAAAGATGTTTGTATACTCCATGGCATCCGGATGAATTTGAAGAATATTGGGAGAATATGATAAAAAAATATGGGTTGGAGGAAAATGAATGGGTTCTAAATGAATATGAGAAGAGGAAAAGTTGGGCAAGCGCTTACTTGAGGGATAAATTCTGTGCTGGACTTAGAACAACATCAAGGTGTGAGGCGATAAACAACTTCATCAAGAGGTTTATTTGCATTCACCAAAGTCTTCTAGAGTTGGTCCAAAATCTTGAACATGCTCTTAGGGACTATAGAAACAATGAATTAGTTTCTCAATTTAAGACGCTGTATGGAGAGCCCGTTCTAACTACTGGGCTAGAAGCATTGGAGCTTTCTGCTGCCAATTTTTACACAAGGGAGATTCTTGGAGAAGTAAAAAAGGAGATTCAAAGAGTGGTCGCATTAGATGTAATAAATGAGGAAAACATATCAACCACTGTTGTGTTAAAAGTTAAGGAGTGTGACAGGAGGCAACATATTTATAACGTACTTTATGATCGCAATACTGAGCATATGGAGTGTGAATGTAGTCGGTGGAGTAGTGAAGGCATTCCTTGCAGCCACATGTTTTGTGCAATGAAAAGGGTAGGTTTACAGAAGTTGCCAGATAGACTTCTTTTGAAAAGATGGTCGAAGGATGCTAAGAAGTATCTGGATGAAAGTTCTGCTGGAGGCACTACGCAAGACAGAGAAAGAGAATTTTTAATGCGCTATGGCGCATTGTCAGTGGCAGCTACGTGGATGGTATTCTTAGGAGCTCAAGATGGTCCTTCTTTCCATGACACTATGAATGAAGTCTGGTGTTGGACCCAAACACTAGAACAAAAATCTGACTTGAAAAGACAAACAAGAGATTCAAATTAA 2214 0.43 MSFSENIITLALYYCPSAALAYPPRRVEVFHAGDRSSRSPDFLLAFSSFSASFAQPGPNLGAMDVDSEPLSSQENVEDCMMNGVEENVNCTCDCGGSSSKCVSVTADDIINQTFETSDAAYNLYVRYARCLGFGVRKGDTARGKDGTQRRRRFFCSKEGKRAEKYISSLSRKREHRALTRTGCEAMLAVYLDTKTSTWRVKKLVEKHNHDLVPKCLVHLIPNHRGLTEPQKAQANTMHDHGLPTSKIMGLMVGQAGGYANVGFTKKDLDNHFQRTRRAKLIGGDSNATISYLLGKADVDPMAMVRYSATDEGRLASLFWADGICRSDYQCFGDVLAFDTTYRKNKYRRPLVIFSGYNHHRQTCIFGFALVEDERTATYTWLLQNFLEVMLNKSPSVVVTDGDEAMKAAIREIFPDATHRLCGWHIQKNVTAKIKNKKFSNDFKRCLYTPWHPDEFEEYWENMIKKYGLEENEWVLNEYEKRKSWASAYLRDKFCAGLRTTSRCEAINNFIKRFICIHQSLLELVQNLEHALRDYRNNELVSQFKTLYGEPVLTTGLEALELSAANFYTREILGEVKKEIQRVVALDVINEENISTTVVLKVKECDRRQHIYNVLYDRNTEHMECECSRWSSEGIPCSHMFCAMKRVGLQKLPDRLLLKRWSKDAKKYLDESSAGGTTQDREREFLMRYGALSVAATWMVFLGAQDGPSFHDTMNEVWCWTQTLEQKSDLKRQTRDSN 737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g01604 737 ProSiteProfiles Zinc finger SWIM-type profile. 611 647 IPR007527 GO:0008270
Aip03g01604 737 Pfam FAR1 DNA-binding domain 123 213 IPR004330 -
Aip03g01604 737 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 108 701 IPR031052 GO:0006355
Aip03g01604 737 SMART 26again6 622 649 IPR006564 GO:0008270
Aip03g01604 737 Coils Coil 517 537 - -
Aip03g01604 737 Pfam MULE transposase domain 334 428 IPR018289 -
Aip03g01604 737 PANTHER OS02G0262500 PROTEIN 108 701 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g01604 Aip-Chr3 18687980 18691064 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Aip03g01604 MULE 4.5e-30 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g01604 - - ahf:112717474 1315.06