Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g01580 ATGGATAATTTTCAATTTAACTTTGAAAATACTGATGAAATATTTGACTATTCTCAAATTGACACAACATACCAACTTGTTAATGGAGGAATGGACCGTGAATTAATGGGAAATAACATATCAGCAACAGAATCTAATGCTCTTTTCGAGAGTACAATAGAGGCTGGTGGATCAGCTAGCGAGATGTATGGAATCAACAGCAATGAGAATTGTGTGCTTATGCCTCCTAGCTGCAATGAAAACAGCAATCTGGGATTCTCAAAGGGTAGTCAACTCTATTCAAGCATGTCACTTCCACTTCCTAACGGCGAGAGTGAAATCGGTGCTACAGATTATCAAGATTCTGGTTTGTCATCGATGTTCCCGATGGGTGATTTGTCTATGGAACCGATCTCAAAGGGTACATGCCAGCAAGCCCGGGAGAAAGCGAAATTGAGATTAAATGAGAAAAAGAAAAATCTAAGGTTTGGTAAGCAAATAAGATATGAATCTCGCAAAGCAAGGGCTGATTCGAGAAAACGTGTGAAAGGTAGATTTGTGAAAGCAGGCGAAGCATATGATTATGATCCTAAGAAGACAAGGAGCCTCTAA 591 0.3942 MDNFQFNFENTDEIFDYSQIDTTYQLVNGGMDRELMGNNISATESNALFESTIEAGGSASEMYGINSNENCVLMPPSCNENSNLGFSKGSQLYSSMSLPLPNGESEIGATDYQDSGLSSMFPMGDLSMEPISKGTCQQAREKAKLRLNEKKKNLRFGKQIRYESRKARADSRKRVKGRFVKAGEAYDYDPKKTRSL 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g01580 196 Pfam CCT motif 140 182 IPR010402 GO:0005515
Aip03g01580 196 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 5 191 - -
Aip03g01580 196 ProSiteProfiles CCT domain profile. 140 182 IPR010402 GO:0005515
Aip03g01580 196 PANTHER CCT MOTIF FAMILY PROTEIN-RELATED 5 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g01580 Aip-Chr3 17865650 17866549 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g01580 1 190 C2C2-CO-like Transcription Factor Family AT3G21880 38.860 8.01e-30 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Aip03g01580 CCT 5.7e-14 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g01580 - - ahf:112737556 389.037
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g01580 03 17865650 17866549 Aip03g01580 03 17865650 17866549 ECH