Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g01579 ATGAGATTTGAGAGGATCATGGAATTTGAAACACTATGTGAGTGCTGTGGGGTTGCAAGAGCCATTGTTTATTGCAAATCAGATTCTGCACGTTTGTGCATGGATTGTGATGTGTCCGTACACAGTGCAAATTGTTTATCTATGAGGCACCTTCGTTCTCTCTTATGTGACAGGTGCAATTCCGAAGCAGCAATTGTTCATTGCATTGAGGAAAAGTTGTCATTTTGCCAAGGTTGTTGTGAATTGAACCAAAATGGGTGTTCAATTTTGGGACACAGGCTTCAATCGTTGAATTGTTACAAAGGTTGTCCCAATTTCACTGATTTGCCTGGCTTATTCTCCTTTGTTCTCGATGATTATTCCTGTTCAAGTGGTTTGGACCATAATGGTGGCGGCAGCGGATCAATTGACACATCATTGCCTAGAAGTCAATGGCATACTCTGGTGACCAAGCAATTTTCCTTCCAAACCTTCCGAAGGATAGCAAGTACTAGAATAATGAGAGAAGTGGTTAGAATTTGCACTGCAAGAAGTAGTAACGTACTTTCTGCAGGAATGTCCGAATTTGAACAATCTAGGAATCCATGA 588 0.4116 MRFERIMEFETLCECCGVARAIVYCKSDSARLCMDCDVSVHSANCLSMRHLRSLLCDRCNSEAAIVHCIEEKLSFCQGCCELNQNGCSILGHRLQSLNCYKGCPNFTDLPGLFSFVLDDYSCSSGLDHNGGGSGSIDTSLPRSQWHTLVTKQFSFQTFRRIASTRIMREVVRICTARSSNVLSAGMSEFEQSRNP 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g01579 195 CDD Bbox1_BBX-like 12 55 - -
Aip03g01579 195 ProSiteProfiles Zinc finger B-box type profile. 8 55 IPR000315 GO:0008270
Aip03g01579 195 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 9-LIKE 12 147 - -
Aip03g01579 195 SMART bboxneu5 8 55 IPR000315 GO:0008270
Aip03g01579 195 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 12 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g01579 Aip-Chr3 17864462 17865633 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g01579 9 118 C2C2-CO-like Transcription Factor Family AT3G21880 50.909 2.34e-35 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g01579 - - ahf:112737556 310.071