Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g01558 ATGTTCCAACCAAACATGACTGAAGCTGTTGGTGGCCTTCACTATCATCATCAGTATCATCCTTTTGATATGGCTCAGAACACAACAACATCGGAGAGTGATGTACCGAGAATTCGAGAGGACGAGTTATTCGACAGCGCCACCAAGTCCGGCAGTGAGAACCTTGAGGTTGAAGGTGGTGGAGGAAGTGGTGGTGGTGGTGAAGGTGGTTCTGCTGGGGAAGACCAAAACCCTCGCCCTAATAAGAAGAAACGCTATCACCGCCACACCCAACACCAGATCCAAGAGATGGAAGCTTTCTTTAAGGAGTGCCCTCACCCAGATGACAAGCAAAGGAAGGAGCTGAGTAGGGAGTTAGGGTTAGAGCCATTGCAAGTGAAGTTCTGGTTCCAGAACAAACGCACTCAAGTGAAGACTCAAACTGAAAGGAGCGAGAACTCACAGCTTAGAGCGGAAAATGAGAAGCTTAGAGCAGATAACATGAGGTATAGGGAAGCACTAAGCAATGCATCGTGCCCTAGTTGTGGTGGCCCAACCGCCATAGGGGAAATGTCATTCGATGAACATCACCTCAGGCTTGAAAATGCACGTCTTAGGGAAGAGATTGATCGAATTTCAGCAATTGCAGCCAAGTACGTAGGCAAGCCTGTGGTGAACTATTCAAACCTCTCCCCTTCCCTCCCACCTCGGCCGCTAGAACTCGGCGTTAGCGGTGGCAGTGGCGGCTTTGGAGGTGGTAGTGACATGTACAGTGGTGGTGCCGGAGACTTCCTGAGGTCGATAAACGGGCCCTCGGAAGCAGACAAGCCGCTGATAATTGAGCTGGCTGTTGCAGCCATGGAGGAGCTAGTTGGGATGGCACAAATGGGTGAGCCACTTTGGTTGACAATGACCTCCATTGACGGTGGCACTTCCACTGTGCTCAACGAGGATGAGTACGTCAGAACCTTCCCTCGTGGAATTGGCCCCAAACCTGCTGGGTTCCGATCCGAAGCTTCTAGAGAAACCGCTGTTGTTATCATGAACCATGTTAACCTCGTCGAAATTCTCATGGATGTGAACAATTGGTCGACAATGTTCTCTGGTATAGTCTCAAGAGCTATAACTATAGAAGTGCTATCAACAGGAGTTGCTGGGAACTACAATGGTGCCTTACAAGTGATGAGTGCAGAATTACAAGTACCTTCTCCACTTGTGCCAACTCGAGAGAGCTATTTTGTGAGATATTGTAAGCAGCATGTAGATGGGAGTTGGGCAGTGGTGGATGTGTCGTTGGATCATTTGCGCCCTGGTCTTACTCCAAGATCTAGAAGAAGGCCTTCTGGTTGCTTAATCCATGAAATGCCCAATGGTTATTCTAAGGTGACATGGGTTGAGCATGTGGAAGTGGATGATAGAGGTGTTCCTAACCTTTACAAGCAGCTTGTAAACTCTGGGCATGCATTTGGTGCAAAACGTTGGGTTGCAACTTTGGATAGACAATGTGAGAGGCTTGCTAGTGCCATGGCAACAAACGTTCCTACCGTAGATGTTGGAGTGATAACAAACCAAGAAGGGAGGAAGAGTATGCTGAAGCTGGCAGAGAGAATGGTGATGAGCTTTTGTGGTGGAGTGAGTGCGTCAACAGCACACACGTGGACAACGCTGAATGGGACAGGTGTCGATGATGTCAGAGTCATGACACGAAAGAGCGTTGATGATCCTGGAAGACCACCTGGCATTGTTCTAAGTGCTGCCACTTCCTTTTGGCTTCCAGTTCCTCCCAAAACAGCCTTTGATTTCCTCCGTGATGAGAATTCAAGAAGTGAGTGGGATATTCTTTCAAATGGTGGAGCAGTGCAAGAAATGGCGCACATTGCAAATGGAAGAGATACCGGAAATTGTGTGTCGCTACTTAGAGTCAATAGTGCAAATTCAAGCCAGAGCAACATGTTGATACTACAAGAGAGTTGCACAGATTCAACAGGCTCCTTTGTAGTTTATGCTCCTGTGGACATTGTTGCCATGAATGTGGTTTTGAATGGAGGGGACCCAGATTATGTGGCACTTCTTCCTTCAGGATTTGCCATCCTCCCCGATGGAAGTTCTGGCGGCTGCGGCACCGGCATTGGTGGTGAAACAAATGGCCCTACTGGCGGAGGCGGTGGTGGCGGAGGTGGTTCTCTATTGACGGTTGCATTCCAAATATTGGTTGATTCAGTTCCAACGGCTAAGCTTTCTCTTGGGTCAGTTGCAACCGTTAATAGTCTTATTTCTTGCACTGTTGAGAGAATCAAGGCTTCTTTATCTGGTGATCCTGCTTCACTATGA 2310 0.4835 MFQPNMTEAVGGLHYHHQYHPFDMAQNTTTSESDVPRIREDELFDSATKSGSENLEVEGGGGSGGGGEGGSAGEDQNPRPNKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQVKTQTERSENSQLRAENEKLRADNMRYREALSNASCPSCGGPTAIGEMSFDEHHLRLENARLREEIDRISAIAAKYVGKPVVNYSNLSPSLPPRPLELGVSGGSGGFGGGSDMYSGGAGDFLRSINGPSEADKPLIIELAVAAMEELVGMAQMGEPLWLTMTSIDGGTSTVLNEDEYVRTFPRGIGPKPAGFRSEASRETAVVIMNHVNLVEILMDVNNWSTMFSGIVSRAITIEVLSTGVAGNYNGALQVMSAELQVPSPLVPTRESYFVRYCKQHVDGSWAVVDVSLDHLRPGLTPRSRRRPSGCLIHEMPNGYSKVTWVEHVEVDDRGVPNLYKQLVNSGHAFGAKRWVATLDRQCERLASAMATNVPTVDVGVITNQEGRKSMLKLAERMVMSFCGGVSASTAHTWTTLNGTGVDDVRVMTRKSVDDPGRPPGIVLSAATSFWLPVPPKTAFDFLRDENSRSEWDILSNGGAVQEMAHIANGRDTGNCVSLLRVNSANSSQSNMLILQESCTDSTGSFVVYAPVDIVAMNVVLNGGDPDYVALLPSGFAILPDGSSGGCGTGIGGETNGPTGGGGGGGGGSLLTVAFQILVDSVPTAKLSLGSVATVNSLISCTVERIKASLSGDPASL 769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g01558 769 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 25 764 IPR042160 -
Aip03g01558 769 Gene3D - 71 157 - -
Aip03g01558 769 ProSiteProfiles 'Homeobox' domain profile. 80 140 IPR001356 GO:0003677
Aip03g01558 769 CDD START_ArGLABRA2_like 269 496 - -
Aip03g01558 769 SUPERFAMILY Bet v1-like 267 499 - -
Aip03g01558 769 ProSiteProfiles START domain profile. 265 500 IPR002913 GO:0008289
Aip03g01558 769 ProSitePatterns 'Homeobox' domain signature. 115 138 IPR017970 GO:0000981|GO:0006355
Aip03g01558 769 SMART HOX_1 81 144 IPR001356 GO:0003677
Aip03g01558 769 Pfam Homeodomain 83 138 IPR001356 GO:0003677
Aip03g01558 769 Coils Coil 139 166 - -
Aip03g01558 769 SUPERFAMILY Homeodomain-like 70 140 IPR009057 -
Aip03g01558 769 SUPERFAMILY Bet v1-like 516 759 - -
Aip03g01558 769 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 25 764 - -
Aip03g01558 769 Pfam START domain 275 497 IPR002913 GO:0008289
Aip03g01558 769 MobiDBLite consensus disorder prediction 27 91 - -
Aip03g01558 769 SMART START_1 274 497 IPR002913 GO:0008289
Aip03g01558 769 CDD homeodomain 83 140 IPR001356 GO:0003677
Aip03g01558 769 Gene3D - 327 497 IPR023393 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g01558 Aip-Chr3 17423857 17432143 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g01558 1 767 Homeobox Transcription Factor Family AT1G05230 72.917 0.0 1117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Aip03g01558 START 1.8e-56 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g01558 K09338 - gmx:100809556 1202.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g01558 03 17423857 17432143 Aip03g01558 03 17423857 17432143 ECH
Aip08g00764 08 7778078 7782648 Aip03g01558 03 17423857 17432143 PCT