Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g01550 ATGGTTATTGGAACAAGGTGGTTTTTGTCTATGCTTGCTTTGTGTTTGTGGATTTTCCGCAATGAAGGAGTGGGAATAACAGGACCTTCACCTAATACCACTGTGAATTCCACTGTTTCTTCTTCAAGACCAAAGGTTGTGAAGATTGGAGTCTTGTTTACTTTGGATTCCATCATTGGAAGATCTGCTAAACCTGCTGTTATGGCTGCCATAGAAGATATTAACTCCAATAGAAGCATTCTCCCTGGCATTGAGCTTCAGGTTATTTTTCACGACACAAATTGCAATGGGTTTCTTGGAACAATGGAAGCTCTGCAGTTGATGGAGAATGATGTCGTCGCCACAATTGGACCACAGTCTTCTTCAATAGCTCATGTCGTCTCTCATGTGGCTAATGAACTTCATGTACCTCTTCTATCATTTGCTGCAACTGATCCTACTCTATCTGCACTTCAGTATCCATATTTTGTCCGAACCACTCACAGTGACTACTATCAGATGTATGCAATCGCTGACTTTGTCGAATATTTCAGATGGAGGGAGGTAGTTGCCATTTTTGTAGATGATGATAATGGAAAGAATGGAATTTCTGTGTTGGGTGATGCATTGTCAACGAAGCGTGCCAAGATCTCTTATAAGGCTGCACTCCCTCTTGGGGCCAACAGAAGTGATGTCAGTGACTTGTTGAGTGAAGTGAACTTAATGGAATCAAGAATCTATGTTCTACATGTTAATCCTGGTTCTGGTTTGTCAATCTTTCGTGTTGCGAAGCAGCTAGGAATGATGAGCAATGGCTATGTTTGGATTGCAACAGATTGGCTTCCTTCGGTTCTGGATTCATCCGAGACACCAGACACTGACACAATGAATGTTCTAGAAGGTGTTGTGGCTTTTCGCAATCACATTCCTGATACTGATATGAAGAAGAGTTTGATCACTAAATTGAAACGTCGAAAGGACAAGCAGACTTCAAGCTTCAATTCCTATGCATTCTATGCATATGATTCTGTCTGGTTAGCAGCTTATGCCCTTGACATTTTTCTCAATGAAGGTGGGAATATATCTTTCTCCAGTGACCCTAGATTGCATGACAATAATGGAAGCACCTTGCATTTAGAATCACTTCGCACTTTTGATAGCGGCCCTCAGTATCTGCAAACTATTTTAAGAACAAACTTCACTGGTTCGAGTGGTCGAATTGGGTTTGATACAGATAGGAATTTAATCCGTCCGGCATATGATATTCTGAATATTGTCGGATCTGGATTGCGTAGAATTGGTTACTGGTCTAATCACTCTAGTTTGTCAGTTGTAGCTCCTGATATTTCATATGCAAAATCATCCAACCATTCTTCTAAAAGCACTCAACAGCTTTATAGTGTGATATGGCCGGGAGATGCTAAAACTACACCAAAAGGATGGGTATTCCCCAACAATGGAAAGCCATTGCGGATAGCAGTGCCGAATCGAGTAAGCTACAAGGAGCTCGTTGCCAAAGACAAGAGTCCTACAGGAGTACAAGGCTATTGCATTGATGTCTTTGAAGCGGCGTTGAACTTGTTGGCTTATCCCGTCCCACGACAATATATATTGTATGGAAATGGTGAAAGGAATCCTAGCTACAATGATCTTGTAGATCAAGTTGCACAAAATAACTTTGATGCAGCTGTTGGAGATGTTACAATTGTCATGAACAGAACAAGGTTTGTGGATTTTACTCAACCTTTTATGGAATCAGGGCTTGTTGTTGTTGTTCCTGTCAAGGAGGAGAAGTCAAGCCCCTGGTCTTTCCTTAAGCCATTCACAGCTCAAATGTGGTGTGTTACTGGTGCTTTCTTTCTTTTCGTGGGAACCGTTGTGTGGATCCTCGAGCACCGGCTCAATCACGAGTTCCGCGGTCCACCAAGGAAGCAACTAATAACAGTCTTTTGGTTTAGTTTGTCAACAATGTTTTTCTCACACAGAGAGAACACTGTGAGTGCTCTCGGGAGACTGGTGCTAATCATATGGCTATTTGTGGTGTTGATTATCAATTCAAGCTACACAGCTAGCTTGACATCAATCCTAACCGTGCAGCAGTTATCGACACAGATCGAAGGAATTGATAGCTTGATCTCTAGTAGTCAACCAATTGGAATTCAAGACGGGTCATTTGTGAAGAAGTATCTGACAGATGAACTCCACATAGCAGAATCTAGGATAGTTACATTGAAAAACATGGAGGCTTATATCGATGCTCTTCAGCGTGGGCCGAGCAATGGAGGGGTTGTGGCGGTTGTTGATGAACTTCCTTATATTGAGATCTTGATGGCCAATACTGAGTGCAAATTTACAACTGTTGGCCAGGAGTTCACTAAAAGTGGCTGGGGATTTGCATTCCAGAGGGACTCTCCCCTCGCCGTTGACATGTCAACGGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTCTTGAACTCTCGGAGAATGGGGACCTGCAAAGGATCCATGACAAATGGCTTAATAAGAAGGAGTGTGCAAGCAATGATGCTGATTCAAACAAACTATCTTTGAAAAGCTTCTGGGGCCTCTTCCTTGTGTGTGGCATTACTTGTTTCCTTGCACTGATTGTATTCTTTGTTAGAGTGTTCTGTCAATACACAAAGTTCATCCCAGAGCACGAAGAAGCCGACGAGGAGAGTCAACAACCAGTCCGGCGGCGTAGAAGGGCAACCAAAACTCCTAGCTTCAAGGAATTGATTGTTTTTGTAGATAAAAGAGAAGCAGAAATTAAAGAGATACTGAGACAGAAGAGTAGAAAGAGGCAGCGCAGCAAAAGTTTAGATGATAACTCAAATTCACCAATCTAA 2898 0.4117 MVIGTRWFLSMLALCLWIFRNEGVGITGPSPNTTVNSTVSSSRPKVVKIGVLFTLDSIIGRSAKPAVMAAIEDINSNRSILPGIELQVIFHDTNCNGFLGTMEALQLMENDVVATIGPQSSSIAHVVSHVANELHVPLLSFAATDPTLSALQYPYFVRTTHSDYYQMYAIADFVEYFRWREVVAIFVDDDNGKNGISVLGDALSTKRAKISYKAALPLGANRSDVSDLLSEVNLMESRIYVLHVNPGSGLSIFRVAKQLGMMSNGYVWIATDWLPSVLDSSETPDTDTMNVLEGVVAFRNHIPDTDMKKSLITKLKRRKDKQTSSFNSYAFYAYDSVWLAAYALDIFLNEGGNISFSSDPRLHDNNGSTLHLESLRTFDSGPQYLQTILRTNFTGSSGRIGFDTDRNLIRPAYDILNIVGSGLRRIGYWSNHSSLSVVAPDISYAKSSNHSSKSTQQLYSVIWPGDAKTTPKGWVFPNNGKPLRIAVPNRVSYKELVAKDKSPTGVQGYCIDVFEAALNLLAYPVPRQYILYGNGERNPSYNDLVDQVAQNNFDAAVGDVTIVMNRTRFVDFTQPFMESGLVVVVPVKEEKSSPWSFLKPFTAQMWCVTGAFFLFVGTVVWILEHRLNHEFRGPPRKQLITVFWFSLSTMFFSHRENTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQQLSTQIEGIDSLISSSQPIGIQDGSFVKKYLTDELHIAESRIVTLKNMEAYIDALQRGPSNGGVVAVVDELPYIEILMANTECKFTTVGQEFTKSGWGFAFQRDSPLAVDMSTXXXXXXXXXXXXXXXXXXXXXXXXXXXILELSENGDLQRIHDKWLNKKECASNDADSNKLSLKSFWGLFLVCGITCFLALIVFFVRVFCQYTKFIPEHEEADEESQQPVRRRRRATKTPSFKELIVFVDKREAEIKEILRQKSRKRQRSKSLDDNSNSPI 965
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g01550 965 Gene3D - 66 410 - -
Aip03g01550 965 Pfam Receptor family ligand binding region 64 420 IPR001828 -
Aip03g01550 965 Pfam Ligand-gated ion channel 800 880 IPR001320 GO:0015276|GO:0016020
Aip03g01550 965 Gene3D - 594 718 - -
Aip03g01550 965 PIRSF IGluLR_plant 10 809 IPR017103 -
Aip03g01550 965 PIRSF IGluLR_plant 829 964 IPR017103 -
Aip03g01550 965 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 36 947 - -
Aip03g01550 965 SUPERFAMILY Periplasmic binding protein-like II 458 801 - -
Aip03g01550 965 Gene3D - 476 593 - -
Aip03g01550 965 SUPERFAMILY Periplasmic binding protein-like I 41 475 IPR028082 -
Aip03g01550 965 Pfam Bacterial extracellular solute-binding proteins, family 3 538 799 IPR001638 -
Aip03g01550 965 Coils Coil 833 839 - -
Aip03g01550 965 CDD PBP1_GABAb_receptor_plant 48 439 IPR044440 -
Aip03g01550 965 Gene3D - 162 434 - -
Aip03g01550 965 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 60 76 - -
Aip03g01550 965 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 333 345 - -
Aip03g01550 965 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 120 148 - -
Aip03g01550 965 CDD GluR_Plant 481 850 - -
Aip03g01550 965 Coils Coil 933 953 - -
Aip03g01550 965 SMART GluR_14 484 852 IPR001320 GO:0015276|GO:0016020
Aip03g01550 965 PANTHER GLUTAMATE RECEPTOR 3.4 36 947 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g01550 Aip-Chr3 17361493 17366144 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g01550 43 791 Ion Channels AT1G05200 65.688 0.0 1070
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g01550 K05387 - gmx:100802782 1388.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g01550 03 17361493 17366144 Aip03g01550 03 17361493 17366144 ECH
Aip08g00761 08 7753017 7757838 Aip03g01550 03 17361493 17366144 PCT
Aip03g01550 03 17361493 17366144 Aip08g00760 08 7742152 7746806 PCT