Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g01547 ATGACAACTGCCATGGATATGGTTAATAAGATTAATCTTGAGAAGGAAGCATGGAACCTCAAAGTTAGGGTGATTAGGCTTTGGACTGTTCCAACTTTCACTGGTCAGCTTCTCCCAAATTCCATGGAGATGATTTTGGTTGATGAATCTGGGTGCAAGATACAAGCTACTGTTCGGAAGACTATGATTTACAAGTTCAAACAACTTCTCTCCGAGGGTCAAGTATATGTAATGAAGCTCTTCTCTGTTGTGCCAAACCAAGGATCTTATAGGGCCACTAGGCATCAGTTTAAGTTGATTTTCCAGTTCAGGACCACTGTTAGGGATGCTATCTGCGATTTTATTCCAAAATCTGCTCTTACAATCTCTCCATTCACTGAACTTTTGGAAACCAAAGAGGATTCCGATTTCTTAGTTGATGTGGTGGGTCTGTTGGTCTCTGTGTCGGAAGAGAAAGAATATGATAAAGATGGAAAGAAGATGAAGATGGCTGTGATGGAACTTGCTGAAAATGATCACAGGATTCGGTGTGCCTTATTTGGTGAATATGTTGACGAACTTAATCGATTTCTGTCTTCTGGGTATGCTGAACAACCAGTTGTGATTTTACAGCTTGCCAAAGTTAAGGTTTTTAGAGGTAAAGTTGGACTTCAGAATGTTATGTTTGCATCAAAGCTTGGATTTAATCTTGACATCCCAGAGGTGGCAGCTTTTAGGAAAAATTCTATTCCACATGGAGTTAGTGCATCCCAACCCATTGGCATTGTTGGATCTGGAAAAAATATCGGAATAGAAGAAGATTTTATGAAGCTCACACCTAGGTGTACTGTGAAGTCGCTTGATGATAACAACCGGGCTGAAACTTTTGTTGTACTAGCGAAAATAGCTGAAATAGTTGAGGATGGCCCTTGGTGGTACTCTGCTTGTGTGTGTGGCAGAGAGTTGGACTTTAGAATGTTATGTTTGCATCAAAGCTTGGATTTAATCTTGACATCCCAGAGTTCTATTCCACATGGAGTTAGTGCATCCCAACCCATTGGCATTGTTGGATCTGGAAAAAATATCGGAATAGAAGAAGATTTTATGAAACTCACACCTAGGTGTACTGTGAAGTCGCTTGATGATAACAACCAGGCTGGAACTTTTGTTGTACTAGCGAAGATAGCTGAAATAGTTGAGGATGGTCCTTGGTGGTATTCTGCTTGTGTGTGTGGCAGAGGTGTTCAGGCAGAATCTGGGATTTACTTTTGTCAATTTTGCAACATCCATATTACAAATGTGACTCCTAGTTACCTACTGAATAAGACTTGTGCCCAGCTGTTTGAACAACATCTTAAGGATGTTGATGTTGTGTTTGGCACACAGTCTCCTCCTATATTCCAAGAAATTGTTGGAAAAACTATGCTGTTCAAGGTTCTTAGTAGGCCTGTTGGGATGGAGAAATTCAAAAGGACTTATCCAGTGAGGCGTGTTTGTGATGATGCTGCAATACTTGGAATGTTTGAGCTCTCTGGTTCATATTTGAGTTCTGAAAAGGCTGGGTTTGTACCAAAAGGAGAGGGATCATTTGGGGAACCCTCTAAGATTACCGAATCACCGAATTTGGGATTGACTCCTTCCAGCTGCTCTGAGCTCTTTGCTGGTTCGCCTAAATGTACCCAACCAAAATCAAGTGTTGTTGACTTGGGAGCTGATGAAGATGTTAAGTGTCCTCTACTCAAGAGAAAGTCTGCTGATGATGTGGTGGATAAGTTAAATGAAGTGGATAGTTCTGAAAATTCATTTGATGAAGTTGATGAAAGTTTATATTTTCATGCAATTGTTTACACTAGGAGTATGTGGTTGGCGTTAATCGAGGCTGTTGATGCTGAGAAAGATGTGAAGCCTTCGTTGAAGAGGTTGAGAAGATCCTTGAGGCTACAGTTTGATGAAGCTGATGAGTCTCGTGGCTCTGGAAATGATGGCTCCTTTGGACATGGGGTTAATTGA 1989 0.4098 MTTAMDMVNKINLEKEAWNLKVRVIRLWTVPTFTGQLLPNSMEMILVDESGCKIQATVRKTMIYKFKQLLSEGQVYVMKLFSVVPNQGSYRATRHQFKLIFQFRTTVRDAICDFIPKSALTISPFTELLETKEDSDFLVDVVGLLVSVSEEKEYDKDGKKMKMAVMELAENDHRIRCALFGEYVDELNRFLSSGYAEQPVVILQLAKVKVFRGKVGLQNVMFASKLGFNLDIPEVAAFRKNSIPHGVSASQPIGIVGSGKNIGIEEDFMKLTPRCTVKSLDDNNRAETFVVLAKIAEIVEDGPWWYSACVCGRELDFRMLCLHQSLDLILTSQSSIPHGVSASQPIGIVGSGKNIGIEEDFMKLTPRCTVKSLDDNNQAGTFVVLAKIAEIVEDGPWWYSACVCGRGVQAESGIYFCQFCNIHITNVTPSYLLNKTCAQLFEQHLKDVDVVFGTQSPPIFQEIVGKTMLFKVLSRPVGMEKFKRTYPVRRVCDDAAILGMFELSGSYLSSEKAGFVPKGEGSFGEPSKITESPNLGLTPSSCSELFAGSPKCTQPKSSVVDLGADEDVKCPLLKRKSADDVVDKLNEVDSSENSFDEVDESLYFHAIVYTRSMWLALIEAVDAEKDVKPSLKRLRRSLRLQFDEADESRGSGNDGSFGHGVN 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g01547 662 Gene3D - 115 246 IPR012340 -
Aip03g01547 662 Gene3D - 6 110 IPR012340 -
Aip03g01547 662 CDD RPA1_DBD_B_like 140 240 - -
Aip03g01547 662 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 357 433 - -
Aip03g01547 662 SUPERFAMILY Nucleic acid-binding proteins 124 240 IPR012340 -
Aip03g01547 662 Pfam Domain of unknown function DUF223 43 132 IPR003871 -
Aip03g01547 662 PANTHER REPLICATION FACTOR A 1, RFA1 357 433 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Aip03g01547 662 PANTHER REPLICATION FACTOR A 1, RFA1 22 312 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Aip03g01547 662 SUPERFAMILY Nucleic acid-binding proteins 8 107 IPR012340 -
Aip03g01547 662 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 22 312 - -
Aip03g01547 662 CDD RPA1_DBD_A_like 20 107 - -
Aip03g01547 662 SUPERFAMILY Nucleic acid-binding proteins 367 475 IPR012340 -
Aip03g01547 662 Gene3D - 352 439 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g01547 Aip-Chr3 17286156 17290033 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g01547 11 239 Core DNA Replication Machinery Family AT2G06510 24.691 6.58e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g01547 - - aip:107607298 491.5