Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g01525 ATGGAGTGGAGTAGAGGACACACTATAGGCCATGGATCCTCAGGCACCGTATCTATAGCCACCCGCCGTGACGGCTGCCGTGTATTCGCCGTGAAATCATCGGAGCTATGCAATTCAGAATCTTTACAAAGAGAACAGAGGATTTTATCTTCTCTATGCTCTCCTTATGTGGTTAATTTCAAAGGGAGTGACATAACCATGGAGAACAACAAGCTCTACTACAATCTCTTCATGGAGTACATGCCATTCGGAACCCTTTCCTCGGAAATTAACCGGCACGGCGGCCGGCTCGATGAGGCAAAAATTAAGACCTACACAAGGCAAATTGTGCAGGGGCTAGAGTATATACACTCTAAAGGGTTGGTACATTGTGACATAAAATGTTCCAACATCTTAATTGGCACCGAAGGCGCCAAGATTGGTGACTTGGGATGCGCCAAGAGTGTCGTCGATCCGCGAATCAGCGGCACTCCGATGTTGATGGCGCCGGAAGCGGTTCGGGGAGAGGATCAAGGGTGTGCTAGTGATATTTGGTCACTTGGGTGCACCATAATTGAAATGGCTAAAGGTGAAGCAGCGTGGCCTAATTTGTTGGACCCATTTTGTGTTCTTTATCACATTGCATATTCCGGTGAAGTTCCTGAGATTCCATGGTTTCTATCTGAAGAAGGTAAGGATTTCTTGGGGAAGTGTCTAAGGTGGAATCCAGAAGAGAGGTGTACCGCTACTCAACTTCTTAATCATCCTTTTCTCGGAGAATTCAATTCCAAGGTGGAATCAAATTCAACATCGCCAACAAGTATTCTTGAGCATGGGTTTTGGAGCTGTGTGGAAGAAGGTTCTCACACAACAAGAACAACAAGCCTTGGGGATTTGCCACCTGACAGGGTTAGAATGTTGGGTTTGTGTTCAGAGGAATCATGTTGGGCATCATGGAATGATGATGATGATGATGGGAACTGGATCACAATTAGAAGGAATGAGTGTGACTCATGGGGTGAAGGGGTTTTTGGTAATTTTGGGTCAGAGACAGCTTCTAGTAGTAATGGTGGTTTGGATCTGAAGGAGTTGGTGGAAAGCAATGTGAGTGTTGTTGATTCCTATGGTCTATGGACAATGAAGCATAGGGAACCAAGATTAAGTGATTTCCATCTCTTGGCAACAAAATCATACGATCTACAAACGATAAAATATCTCACAGATTTTATATATACAGTTGTTGATTCCTATGGTCTATGGACAATGAAGCATAGGGAACCAAGATTAAGTGATTTCCATCTCTTGGCAACAAAATCATACGATCTACAAACGATAAAATATCTCACAGATTTTATATATACAGTATTCCTGAAACGGATGGATGTTGACAAAGAAATGGAATCAATCAACCGTGTGCTAGGTGAGAGGTCGGTGCTGCGAATTTCGGGAACGAAAGATAACCCAGGTCGACGATTTTGGGGCTGCGTCTACTATGAGGTTAAAAAAGAGTGTCAGTTTTTTCATTGGGCAGACCCAGAAACTGAAACTGAAAATTCGCAGGTTGCAAGGTTGAAGAGGAAAGTTGTAGTCCTGAGAGCAAACGTGAAGGCATCTGAGTGGAAGTTGAAGGTTGTTGCAGTGTTGGACATGGTTGGGTGGGAGACTTTGTTCATAACTAGTTGGCTTGAGCTGGATGTACCCTTCTCCTTGGCAACTGGTGGTGGTTGTGTTGAGCTTCTGATGGGCTTCATCTTGGACCTTTACTGGGGAGTAGCTGCTGATGTTGTGTTGGGCCTAGATGCATGTGTTGTGGGCTTGGGGATGGGTTGGGATGACTTGGACCTGATTATGGGTATTGTGCTGGTGGCTAGTTGGGGCTGTGATGATGATTTTCTTGCGGATTGGACCTCTTCCTCCCTCTGGTAG 1905 0.4493 MEWSRGHTIGHGSSGTVSIATRRDGCRVFAVKSSELCNSESLQREQRILSSLCSPYVVNFKGSDITMENNKLYYNLFMEYMPFGTLSSEINRHGGRLDEAKIKTYTRQIVQGLEYIHSKGLVHCDIKCSNILIGTEGAKIGDLGCAKSVVDPRISGTPMLMAPEAVRGEDQGCASDIWSLGCTIIEMAKGEAAWPNLLDPFCVLYHIAYSGEVPEIPWFLSEEGKDFLGKCLRWNPEERCTATQLLNHPFLGEFNSKVESNSTSPTSILEHGFWSCVEEGSHTTRTTSLGDLPPDRVRMLGLCSEESCWASWNDDDDDGNWITIRRNECDSWGEGVFGNFGSETASSSNGGLDLKELVESNVSVVDSYGLWTMKHREPRLSDFHLLATKSYDLQTIKYLTDFIYTVVDSYGLWTMKHREPRLSDFHLLATKSYDLQTIKYLTDFIYTVFLKRMDVDKEMESINRVLGERSVLRISGTKDNPGRRFWGCVYYEVKKECQFFHWADPETETENSQVARLKRKVVVLRANVKASEWKLKVVAVLDMVGWETLFITSWLELDVPFSLATGGGCVELLMGFILDLYWGVAADVVLGLDACVVGLGMGWDDLDLIMGIVLVASWGCDDDFLADWTSSSLW 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g01525 634 Pfam GRF zinc finger 467 504 IPR010666 GO:0008270
Aip03g01525 634 ProSitePatterns Serine/Threonine protein kinases active-site signature. 121 133 IPR008271 GO:0004672|GO:0006468
Aip03g01525 634 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 1 342 - -
Aip03g01525 634 CDD STKc_MAPKKK 2 251 - -
Aip03g01525 634 Pfam Protein kinase domain 5 251 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip03g01525 634 ProSiteProfiles Protein kinase domain profile. 3 251 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip03g01525 634 ProSitePatterns Protein kinases ATP-binding region signature. 9 32 IPR017441 GO:0005524
Aip03g01525 634 Gene3D Transferase(Phosphotransferase) domain 1 2 289 - -
Aip03g01525 634 SUPERFAMILY Protein kinase-like (PK-like) 3 275 IPR011009 -
Aip03g01525 634 SMART serkin_6 3 251 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip03g01525 634 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 15 1 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g01525 Aip-Chr3 16761250 16768648 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g01525 1 327 MAP Kinase Kinase Kinase AT1G05100 48.830 9.28e-97 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Aip03g01525 Pkinase 2.9e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g01525 K20716 - gmx:100819665 427.557
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g01525 03 16761250 16768648 Aip03g01525 03 16761250 16768648 ECH
Aip08g00730 08 7170142 7171459 Aip03g01525 03 16761250 16768648 PCT