Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g01488 ATGTTCAACGGAATGATGGATCCTGAGTTGATCAGAATCGCTCAGGAACAGATGAGTCGCATGTCACCCGCTGAGTTGGCTCGGATCCAACAACAGATGATGTCTAATCCTGATCTGATGAGGATGGCTTCAGAGAGCATGAAGAACATGAAGCCTGAAGACTTTAAACTCGCTGCAGAACAGTTAAAGCATACTCGTCCTGAAGATATGGCTGAGATCGGTGAGAAGATGGCTAATGCATCACCTGATGAAGTAGCAGCTATGCGCTCCCGTGTTGACGCACATATCAAATATCAATTGAGTGCAGCTGAGTTGTTGAAGAAGCAGGGCAATGAGCTTCATAACAAGGGGAAGTTCACAGATGCTTTGGAGAAGTATTCTCGCGCTAAAGAAAATATTAAAGAGATTCCCTCTTCTGAAAGTAGAAAACTTCGTTTGGCATGCTCACTCAACTTGATGTCCTGCTACCTGAGGACAAAGCAGTACAATGAATGCATAAAAGAAGGTTCTGAGGTTTTGGAATGCGATGCAAAGAATCTTAAGGCTCTTTATCGGAGAGGGCAAGCATATAAAGAACTGGGTTTACTAAGGGATGCTGTTGCTGATTTGAGTAAAGCACTTGAAGTGTCCCCTAATGATGATACAATTGAAGAGCTTTTAAGGGACACCAAGGAAATGTTGACAAAGGAAGGTGGTGACTATGCTCCTGGAGGATTAGTAATTGAAGAAATCACTGAAGAAATTGAGAATGTGCCTTCTGGAAAGAACAAAAGCTCTTCTTCAGAACAAAAGGTGGTTCAACCAAGAAAGTCTGGTGAATCCTCAAATAGTTCTAATACAGTAAATGGAAATCCAATAACAAATGCCGAGAGTATAGATAAGTTGAAAAATGATCCAGTAGCTATGAGATCTTTCCAAAACTTCATTTCAAATGCCGATCCTGCTACTCTGGCTTCTTTAAATCCTGGACAATCCAATGATATATCCCCAGAGATGATGAGAACTGCTACAAATATGATTGGAAAAATGTCTCCTGAGGAACTTCAAAAAATGCTTGAAATGGCTTCTTCATTCCAAGGGGACAACCCAATTTTAAGGGGAGGTTCCCCCAATTCTCCTTTCAACCCTGGATCAATTCCTCCCAACATATCACCTGATATGTTAAAAACAGCAAGTGATATGATAGGTAAAATGTCACCAGATGACCTTCAGAAGATGTTTGAAATGGCTTCCTCATTGAACGGGAGAGGATCTGTTCCATTGTCAGCACCTGTGGACAATACTGAAAGAAGTTCTTCCCTGTCGGACTTACCAACCTCAAGTACTAGTGGAACTAGTGTTTCTGGAGAGTCAAGTTCTTCTCAAAATGTCTTCCCAAATATGAGAAATGCTTCTCAGCCGAACTTCCCTTCCTCGACCACAGATTTGCAAGAACAGATGAGAAATCAGATGAAGGACCCAGCTATGCGGCAGATGTTCTCATCAATGATTAAAAATATGAGTCCAGAAATGATGGCAAACATGGGCGAACAATTTGGTTTCAAGCTTTCACCCGAGGATGCAGCAAGAGCTCAGCAAGCCATGTCATCCTTATCGCCAGAGAGCTTGGATAAAATGATGGTTTGGGCAGACAGGGTTCAAAGAGGAGTTGAAGGTGCGAAAAAGACGAAGAACTGGCTGCTGGGGAAACCTGGCATGATCTTGGCAATATGCATGCTCATTTTGGCTATCATTCTTCATCGATTCGGCTTCATTGGTAGCTAG 1764 0.4235 MFNGMMDPELIRIAQEQMSRMSPAELARIQQQMMSNPDLMRMASESMKNMKPEDFKLAAEQLKHTRPEDMAEIGEKMANASPDEVAAMRSRVDAHIKYQLSAAELLKKQGNELHNKGKFTDALEKYSRAKENIKEIPSSESRKLRLACSLNLMSCYLRTKQYNECIKEGSEVLECDAKNLKALYRRGQAYKELGLLRDAVADLSKALEVSPNDDTIEELLRDTKEMLTKEGGDYAPGGLVIEEITEEIENVPSGKNKSSSSEQKVVQPRKSGESSNSSNTVNGNPITNAESIDKLKNDPVAMRSFQNFISNADPATLASLNPGQSNDISPEMMRTATNMIGKMSPEELQKMLEMASSFQGDNPILRGGSPNSPFNPGSIPPNISPDMLKTASDMIGKMSPDDLQKMFEMASSLNGRGSVPLSAPVDNTERSSSLSDLPTSSTSGTSVSGESSSSQNVFPNMRNASQPNFPSSTTDLQEQMRNQMKDPAMRQMFSSMIKNMSPEMMANMGEQFGFKLSPEDAARAQQAMSSLSPESLDKMMVWADRVQRGVEGAKKTKNWLLGKPGMILAICMLILAIILHRFGFIGS 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g01488 587 Gene3D Tetratricopeptide repeat domain 89 233 IPR011990 GO:0005515
Aip03g01488 587 SMART tpr_5 146 179 IPR019734 GO:0005515
Aip03g01488 587 SMART tpr_5 103 136 IPR019734 GO:0005515
Aip03g01488 587 SMART tpr_5 180 213 IPR019734 GO:0005515
Aip03g01488 587 Pfam Tetratricopeptide repeat 181 213 IPR001440 GO:0005515
Aip03g01488 587 ProSiteProfiles TPR repeat profile. 180 213 IPR019734 GO:0005515
Aip03g01488 587 MobiDBLite consensus disorder prediction 414 474 - -
Aip03g01488 587 PANTHER FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKPA 59 587 - -
Aip03g01488 587 ProSiteProfiles TPR repeat region circular profile. 180 213 - -
Aip03g01488 587 SUPERFAMILY TPR-like 95 225 IPR011990 GO:0005515
Aip03g01488 587 MobiDBLite consensus disorder prediction 251 291 - -
Aip03g01488 587 MobiDBLite consensus disorder prediction 250 292 - -
Aip03g01488 587 MobiDBLite consensus disorder prediction 424 474 - -
Aip03g01488 587 PANTHER OUTER ENVELOPE PROTEIN 61 59 587 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g01488 Aip-Chr3 16362215 16367425 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g01488 93 227 Calmodulin-binding Proteins AT5G48570 34.752 2.47e-17 83.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g01488 - - gmx:100800315 859.751