Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g01459 ATGGACTATTCAGAAATCGAGGTTCCTGCACCATTTCTATGCCCAATATCACTTCACCTAATGAGAGAGCCTGTTACTGTTTCAACAGGAATCACATATGATAGAGAATCCATAGAGAGATGGTTATTCTCATGCAAGAATTTCACTTGCCCTGTTACAAAGCAACAAGTTTTACAAACACAAGATCTTACTCCAAACCACACTCTTCAAAGGTTGATCCAAAATTGGTGCACTCAGAATCATGTCTCACTTGATGAAACGACTCAGCATGATTCTAGTTCAACCATTGAAAAAGCTCAAGTTGTGAAACTCTTGAATGAAGCAAAGAGGTTTTCACATGATGAGAAATTGAAGTTTCTCAAATGGATTAAAACAATTGCTCTGGAGAGTGAAAGTAACAAACAGTGTTTGGAATCTGCAGGGGCAATAGATTTCTTGGCTTCAACCATGGATGAAGCACATTCAACTTTGTTCATCATTGAAGCAGGTATTGAACTCTTGTTTAAATTGAATCCTTCAATATATCAGCTAAAGTATCTTATAAACAATGAAAAAATTCACTTTTTTGAGTCATTGTTTCATGTATTGAGACTTGGAAACCAAGAATCTAGAACTTATGCAACATTGCTATTGAAATCATCATTTGGGGTGGCCAATCCAACCCAATTGAGCTGTGTCAAAACCGAATATTTTGTCGAAATATCAAGAGTGATAAGGGACAAGATCTCACAAGAAGCTTCCAAGGCCGCGCTGAAGCTTCTTGTGGATCTTTGTTCCCGGGGCAGGAACCAGGTCAGAGCAGTCGAGGCTGGCTTAGTACTAAACCTCATTGATCTCCTCATTGATAGTAACAATATTTCCGAAAAACGGATTTGTGAACTCATATTGATAGCTTTGGATAGGCTCTGCGGCTGCGCAGAAGGGCGCGCCGCCTTGTTGAGCCATGGTGCTGCTGTCGCCGCCATTTCGAAGAAGATTCTAAGGGTTTCTTGTGTTGCAAGTGATAGAGCTGTTAAGATTTTGGCCACAGTTTGTAGGTATTCAGCAACACTTAATTTGCTTCAAGAGATGTTGGTGGTTGGTGCTGTGTCTAAGTTGTGTTTGGTGCTTCAAGTGGATAATGGTGCTTCCAATAAGGCTAAGGAGAGGGCTAGTGAGATCCTTAAGTTGCATACAAAGGTTTGGAAGAATTCCCCATGTATTCCTGTTAATTTGCTTTCAAACTATCCATGA 1233 0.4015 MDYSEIEVPAPFLCPISLHLMREPVTVSTGITYDRESIERWLFSCKNFTCPVTKQQVLQTQDLTPNHTLQRLIQNWCTQNHVSLDETTQHDSSSTIEKAQVVKLLNEAKRFSHDEKLKFLKWIKTIALESESNKQCLESAGAIDFLASTMDEAHSTLFIIEAGIELLFKLNPSIYQLKYLINNEKIHFFESLFHVLRLGNQESRTYATLLLKSSFGVANPTQLSCVKTEYFVEISRVIRDKISQEASKAALKLLVDLCSRGRNQVRAVEAGLVLNLIDLLIDSNNISEKRICELILIALDRLCGCAEGRAALLSHGAAVAAISKKILRVSCVASDRAVKILATVCRYSATLNLLQEMLVVGAVSKLCLVLQVDNGASNKAKERASEILKLHTKVWKNSPCIPVNLLSNYP 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g01459 410 PANTHER WDSAM1 PROTEIN 7 410 IPR045185 GO:0061630
Aip03g01459 410 Pfam U-box domain 8 80 IPR003613 GO:0004842|GO:0016567
Aip03g01459 410 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 92 IPR013083 -
Aip03g01459 410 ProSiteProfiles U-box domain profile. 7 83 IPR003613 GO:0004842|GO:0016567
Aip03g01459 410 SMART Ubox_2 11 76 IPR003613 GO:0004842|GO:0016567
Aip03g01459 410 Gene3D - 93 396 IPR011989 -
Aip03g01459 410 SUPERFAMILY RING/U-box 4 83 - -
Aip03g01459 410 PANTHER OS11G0573500 PROTEIN 7 410 - -
Aip03g01459 410 SUPERFAMILY ARM repeat 112 390 IPR016024 -
Aip03g01459 410 CDD RING-Ubox_PUB 12 55 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g01459 Aip-Chr3 15700375 15701894 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g01459 1 410 U-box Gene Family AT2G35930 48.418 1.11e-125 367
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g01459 - - gmx:100778012 479.944
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g00704 08 6714431 6715666 Aip03g01459 03 15700375 15701894 PCT