Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g01442 ATGGATAAATGTTTGGTTTTCCATTGGGATTGCAGATATGTGTTGAAGAAAATCAGGCTTGCTAGGCAGACTGAAAGATGCAGAAGATCTGCACATCAAGAGATGGCTCTTATTGCTAGAATCCAGCATCCTTACATTGTAGAATTCAAGGAGGCATGGGTTGAGAAGGGTTGCTATGTCTGTATTGTTACTGGATACTGTGAAGGAGGAGATATGGCCGAATTGATGAAGAAAACAAATGGTGCTTACTTTCCTGAGGAGAAACTCTGCAAATGGTTCACTCAGTTACTCTTGGCAGTGGAATATCTTCATTCAAATTTCGTTTTACATCGTGACCTAAAGTGTTCCAACATTTTTCTTACCAAGGACCAAGATGTTCGCCTCGGGGATTTTGGGCTCGCTAAGACGCTAAAAGCAGATGATTTGGCTTCATCGGTGGTCGGGACTCCCAATTACATGTGTCCTGAACTGCTTGCGGATATTCCTTATGGATTCAAATCTGATATCTGGTCACTAGGGTGCTGTATATATGAGATGGCTGCTCATCGCCCGGCTTTTAAAGCTTTTGATATGGCAGGACTAATAAGCAAGATAAACCGTTCCTCTATTGGCCCGTTGCCTCCTTGTTATTCCCCTTCCTTGAAAACACTGATAAAGGGCATGCTAAGAAAAAGTCCGGAGCATCGGCCAACAGCATCAGAAGTGTTAAAGCACCCTTACTTGCAACCTTATGTTGATCAATATCGTCCGTCTTTTAGTTCTCCAACATCATGTTCTCCAGGAAAACCGATTTCAGCTGTCAATTATTCTAGAAAAAATATGGCTGAAAGTCAAAGCAGTACTAGTTCAAGTAGTGACAAAGACAGTTTGATGTCACATGAGAGACACATTGCAACATCCGTGCCCGAGCATAACAAAGCCACCGAAACAGATATGGCATCAATTGATGACGATAGCTCAGAGAATCTCCTGGCTAGTGAAGAAGAAAACGGCTCTAATAATGTCAATGCTAAAGCAACTGAGCAAGAAGTGATGAAACCATCTTATAATGAGCCATGTTCTAATATTGAATCTAAGCAGCCGAAAACAATTAGAAGTATAATGATGGCGTTAAAAGAAGGAAAACTTAGAGAAGCAACTTCTCCGATGAGAGGCAATCGCATAAAGGTTGGTGGTGTATCAACACCAAAGACTAATATAGAGACGTTGTCCAAATTGCCAAAACCCAATTTCACAGCTCCTGGATTGAAGCCAAATGTAGAGTCCCCAGCTGTTGCGCATCCAAAGGGATCCCCGGACTCTGTAAAACGAATACAAGGATTGCATCCTTCAAAGCATCAGTTGCCAGTGACAGAGTCCTCACCAAAAGCGAAACCTAGGCACGACTTGACTTCGCCATCTGGCAATGTCAAACCAGTAGAGGGAGAAGGACTTCCTGATAGAACATTGCAAAGGACTCCCCCTACCTTAACTAGACGACCTTCATTTCCGGCTCGAATGAGGCCAGTTGGGCTTGATGTTCCAAATGCAACAAATGATAATGGGAAGTCAGGTTCAAATAGAACAGCTCAGGAGCCCGACATTAGCCGTTGTCAGTTGACCAATGGCAATGTACCACATCTTTCTAGACCAGCTGCTAGAGAGCCTCAGAAGGCTTTTGGCCGAAGCTCCAAAGGAATGCAAACAGACAGCAGTAATTCCGCATCATCTTCGGTCTCTATTCAAGGATGTGAAATTTATGATGATGCAACAATTTTTATTGACATGAGAGAAGAAACACTTCCTGATAACGAGAATGTACTCAAAAATGTAGGTGCAGAATCATGCCCACCTACAACCTGTGCACATTGTAAGAAGGTTGAAAACGTTTGCAACAAGACTGGCGAGGTTACCTGGAGTTTTCGGAACACTAATAGTAATGAGAAAATGGATTCAAGGATAAGTCTTGATCTCCCTATTGAAGATTCTGAGGTTACTTCTGCATCAGAAGATAGCCTTCCTGTTAAACATACAAGTATCAATGTTTCCTTTGGATCTGATAATAAATCTGTAGGCCCTTGTGCTGAAGCCGCAGACGAAATCATAGATCATCATGATATTTCTAAGGAAATAACATTAGCCACAACTATCCAACATCCACTTGAAAATTCTGCAGAAAAGCCGGTTTATGGCGGTGTTCTTCCACTAAGGAAGTCTGAAGGTAAGTCTGAAATCGTTTGTCAGCCAGAACCCATGTGTAAGTCCTCTGGGGACGACAAATCCACAGTGAGGGAGCGATTATCATCGGTGTCTGAAACTGCTCCTCTGATTACATCTACTAAGCTATCGAGCCAGAAAGTCTTGCAAGAGAAAGGTACTGTTGTGCAGAATCCAGCACCGGAAAGGCCAGATGCTGGCCATCTTCCTCCGGCCTTTGATGATGTCATCCATGTAATACGGCATAGCAGTTACCGGGTTGGAAATGAGCAGCCAGTTAAGGAATCTGTTGAGAAAGGAGTTCAAAATTTAGATGTTGGTAAGTTCATCAATGTTGTGAGGGATGATGTAGAAGCAAGAAATTCAAGCCCTCCTTTGACATTGAAATCTTCTAGTTCCTCTGAACTGCCAAGCACGAAACCAAATACATCTGATCAGTTCGAAACAAGAAACAATGGCACTCTGCCAATCGTTAAATCTCCAAGTTTCTCTGATGCTTCATGCATGAAATCAACTATGTCTGATCATGCTGGTCTTAAGGAACAAGACAAAAGCAACCCGGTTTCATTAGTTTCAGAATCTAATTCCACCGAGTTAAGTAAACACGATACTCCTACAACCGAAGACAAACCTCCGGTGAAGGAAATACTGGATGTGAAATCTTTCAGGCAGAGAGCCGAGGCACTCGAAGAGCTCCTAGAATTGTCTGCGGAGTTGCTGCAGCAAAATAGATTGGAGGAACTTCAAGTTGTTCTGAAGCCCTTTGGGAAAGACAAGGTTTCGCCAAGGGAGACAGCGATTTGGTTAGCGAGAAGTCTTAAAGGAATGATGTCCGAGGAATGCGGAGGACGCGGTTCATGA 3057 0.4305 MDKCLVFHWDCRYVLKKIRLARQTERCRRSAHQEMALIARIQHPYIVEFKEAWVEKGCYVCIVTGYCEGGDMAELMKKTNGAYFPEEKLCKWFTQLLLAVEYLHSNFVLHRDLKCSNIFLTKDQDVRLGDFGLAKTLKADDLASSVVGTPNYMCPELLADIPYGFKSDIWSLGCCIYEMAAHRPAFKAFDMAGLISKINRSSIGPLPPCYSPSLKTLIKGMLRKSPEHRPTASEVLKHPYLQPYVDQYRPSFSSPTSCSPGKPISAVNYSRKNMAESQSSTSSSSDKDSLMSHERHIATSVPEHNKATETDMASIDDDSSENLLASEEENGSNNVNAKATEQEVMKPSYNEPCSNIESKQPKTIRSIMMALKEGKLREATSPMRGNRIKVGGVSTPKTNIETLSKLPKPNFTAPGLKPNVESPAVAHPKGSPDSVKRIQGLHPSKHQLPVTESSPKAKPRHDLTSPSGNVKPVEGEGLPDRTLQRTPPTLTRRPSFPARMRPVGLDVPNATNDNGKSGSNRTAQEPDISRCQLTNGNVPHLSRPAAREPQKAFGRSSKGMQTDSSNSASSSVSIQGCEIYDDATIFIDMREETLPDNENVLKNVGAESCPPTTCAHCKKVENVCNKTGEVTWSFRNTNSNEKMDSRISLDLPIEDSEVTSASEDSLPVKHTSINVSFGSDNKSVGPCAEAADEIIDHHDISKEITLATTIQHPLENSAEKPVYGGVLPLRKSEGKSEIVCQPEPMCKSSGDDKSTVRERLSSVSETAPLITSTKLSSQKVLQEKGTVVQNPAPERPDAGHLPPAFDDVIHVIRHSSYRVGNEQPVKESVEKGVQNLDVGKFINVVRDDVEARNSSPPLTLKSSSSSELPSTKPNTSDQFETRNNGTLPIVKSPSFSDASCMKSTMSDHAGLKEQDKSNPVSLVSESNSTELSKHDTPTTEDKPPVKEILDVKSFRQRAEALEELLELSAELLQQNRLEELQVVLKPFGKDKVSPRETAIWLARSLKGMMSEECGGRGS 1018
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g01442 1018 Gene3D Transferase(Phosphotransferase) domain 1 69 346 - -
Aip03g01442 1018 MobiDBLite consensus disorder prediction 917 933 - -
Aip03g01442 1018 Coils Coil 955 981 - -
Aip03g01442 1018 Pfam Protein kinase domain 7 241 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip03g01442 1018 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK5-LIKE 12 1001 - -
Aip03g01442 1018 MobiDBLite consensus disorder prediction 288 302 - -
Aip03g01442 1018 MobiDBLite consensus disorder prediction 399 572 - -
Aip03g01442 1018 MobiDBLite consensus disorder prediction 317 356 - -
Aip03g01442 1018 CDD STKc_Nek 13 241 - -
Aip03g01442 1018 ProSitePatterns Serine/Threonine protein kinases active-site signature. 108 120 IPR008271 GO:0004672|GO:0006468
Aip03g01442 1018 MobiDBLite consensus disorder prediction 851 943 - -
Aip03g01442 1018 MobiDBLite consensus disorder prediction 510 539 - -
Aip03g01442 1018 SUPERFAMILY Protein kinase-like (PK-like) 4 295 IPR011009 -
Aip03g01442 1018 Gene3D Phosphorylase Kinase; domain 1 7 66 - -
Aip03g01442 1018 MobiDBLite consensus disorder prediction 273 287 - -
Aip03g01442 1018 ProSiteProfiles Protein kinase domain profile. 1 241 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip03g01442 1018 SMART serkin_6 3 241 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip03g01442 1018 MobiDBLite consensus disorder prediction 855 903 - -
Aip03g01442 1018 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 12 1001 - -
Aip03g01442 1018 MobiDBLite consensus disorder prediction 555 572 - -
Aip03g01442 1018 MobiDBLite consensus disorder prediction 273 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g01442 Aip-Chr3 15245406 15251273 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g01442 29 265 MAP Kinase Kinase Kinase AT3G06030 32.922 1.78e-33 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Aip03g01442 Pkinase 2.9e-58 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g01442 K08857 - gmx:100784761 1352.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g00687 08 6459233 6464952 Aip03g01442 03 15245406 15251273 PCT