Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g01430 ATGATCGAAATGACATCCAATAACCCTTACGAAATCATAGACGATGATGATGAGGGGTTTGATTGGGAAGCAGCTGCAAGAGAAATCGACGTCGTTTGCCAACAAAGCAAGTGTGTTAGCAGCAGTGGCTGTGATGCAAACGGGAAGGCGAAGGCGAAGGGAAACAATGGCGACTCATCCCGGCAATCCACTCTCGATCAGTTTGTGGTCACTGCCAAGAAGGAAGCCCCAGTGCTTCAGGCCCAACACGAAGAAGAAGAAGTCCCAACCTCCGCCATCCACCACATTGATGCCGACGCAGCCAAAACTTGGATATACCCTGTTAATGTTCCTCTCCGCGACTATCAATTTGCCATCACCAAATCCGCACTTTTTTCAAACACATTGGTGGCATTGCCAACAGGATTAGGCAAGACACTTATCGCTGCTGTTGTTATGTATAACTACTTCAGATGGTTTCCTCAAGGAAAAATAGTCTTTACTGCTCCTTCTCGACCACTTGTCATGCAGCAGATAGAAGCATGCCATAATATTGTTGGAATACCCCAGAAATGGACAATTGATATGACGGGTCAAATAAGTCCTCCCAAAAGAGCTTGTTTTTGGAAAACAAAGCGGGTTTTCTTTGTCACCCCACAAGTGTTGGAGAAAGATATTCATTCTGGTATATGCTTAGTAAAGTACTTGGTGTGTTTGGTTATTGATGAAGCTCACAGAGCTACAGGAAATTACTCTTATTGTGAAGCTGTTCGTGAGCTGATGGCTGTACCAGTGCAACTTAGAATATTAGCATTAACTGCAACCCCAGGATCAAAGAAGCAGACAGTCCAGCATGTTATTGATAATCTTCATGTCTCCAAGCTTGAATATCGCAGTGAAGTTAACCATGACGTTATCCCATATGTTCATAACAGGAAGATAGAGTTGGTAGAGGTTGCAATGGGCCAAGATGCTGCAGAAATAAATGATAAGCTTTTGGATGTCATACGTCCAATAGTAGCAAGGCTTAATGATATTGGGGTCATTCAGAATAGAAATTATCGTACTTTGAGCCCTTGTACGTTACTTGAAATAAGGGAAAAGTTTCGTCAAGGACATAGGCAAGACCTTTCTAATATCAACAATGTAGATGTCGAAGGGTATTTTGGGGTTCTTATCACTCTTTATTACATCCATAAGCTACTTTCAAGTCATGGAGTAAGGCCAGCACAAGAAATGCTTGAAAGAAAATTGAAGCAAGGGTTTTTCGCAAAATATATGAGTAAAAATGAAGTTATGCTGAAAGCAAGGCAACTGATGCAGCAAAGCTTGTCTCATGGAGCATCTAGTCCTAAGCTCTCCAAAATGCTAGAAGTACTACATGATCATTTCAAAACCAATGATCCCAAAAGTTCAAGGGTGATTATCTTCTCCAATTATAGAGAGAGTGTCAGGGACATTATGGGTGCACTTGGAAACATTGGGGAACCAGTCAGAGCTACAGAGTTTATTGGTCAAAGTTCAGGGAAAGCAATGAAAGGTCAGTCCCAAAAAGTTCAACAGGCTGTGCTGAAGAAATTTCGGTCCGGTGCCTACAATGTTATTGTTGCTACATCAATTGGTGAAGAAGGTCTAGATATAATGGAAGTTGATCTTGTCATATCTTTTGATGCAAATATTTCACCACTTAGAATGATTCAGCGAATGGGAAGAACTGGAAGAAAGCATGATGGACGAGTTGTAATTTTAGCTTGTGAAGGGTCAGAGTTGAATGGCTACTTGCGGAAGAAGGCAAAGAGCAAGACTATAAGTAAACACATGCGAAATGGGGGTGTAGATAGCTTCAACTTTCATCCTAGTCCAAGAATGATTCCCCATGTCTTCAAACCTGAAGTTCAATATGTTGAGATGTCAATTGAGAAATTTATTCCCCGTGAAAAGAATGTGAAAGATGTCCCTCTTCCATTTTCTCCATCCAAAGATAAACTCACTGTTGCTGAAATGGATTTACTTAAAATGTATTTCCATTCTACTGAGGAAAATACAAGTAGATTGTCTCTCATTGCCTTTCCTTACTTTCAAACCTTTCCTTCTAGAATTCATAAAGTGAAGCATTCCCTTAGAACAATGATGCTTATAGACGCAATGCAGCATTTGCAAGGATTAGAAATGTGTCCCGGAAATGACAAAACTACTCTTCAGGTTTTACATCCTTTCCTAAATTATGGGAATTTCTTATTGTTTGTATCTTCTACTTCAGACACTGAATCATGCTATAGGCATACAATGGAAAGGAATGTTGACACCGTAAATTGTATGAACTTGGATTCCCATCCTTTGAGGATTAAAACCAAAGATACTATTGATCTAACTATACAAGAAGATAGTACTTTCGATGACTTGATTGAGCATGAAGAGGATTCACTCCAGGGTGATGAGATAGTTCCCGAGACTCCGGTTGCTAATAAAAGTGCATCAAATGGAGGAGATAATGCTGGTGAAACGACCAACCTTTTGGTCAAGACTTCATTGTTTCCAGAAGATGTATGCATTAATGGCATTAGAGAAGGAGAATTTAGTCCTCGCTTAACTGATTTCATTACAAGTGGTGTTGTTCCAGAGTCTCCAGTTGATGATGAACAAGAGAAATCAAGAGGCAAGTCTATAATTCGAGACTGTATTTTGCCTGTTCGACTCCACGAAGAACAGGATACATGTCCCTTGAGTTCTATGCGAAGTGAAAAAGTTGTAATTGAGGGCAGTACTGGAAAGAATGTCTCTGATTCTCCAGTAGATAATGGAACTCGAACTCCTTTACTTGAGTTGAAGAATTCTGCAATTAAAAGACGACGCATCATTATTTCCCAAACTGAGGAAGGTCACTCACACATGTCTGACCCAAGCTTCAGGGAAGAATCACATTTAAGCTCTGGTAAAATGCCTGGAACTGTAAGTATTCAACCTTTGCGCAAATTTAAAAGGTTGCGGAAAGCTGCAGATGGTGACAGCAAAGTTAATCAGGAAAACAATGATCCCACCCGATATAAGCATGTTCAAAGTAAAAGGAAATCAACGAATGATGTGAGAGACTTCATTGAGGAGGAAGCTGAGGTTTCTGCAGAGGCAAATGTATCTAGTGACGAAGATGGAGAAGATGATGTTTCTTATGACAGTTTCATTGATGACAGGACAAACCCTATAGGAGAAAGTCAGCCTGAAGTTAGTAGAGTGGACATGATGGCAATTTACAGGCGTTCTTTGCTTAGTCAAACGCAGATAAATGGAAGTTACAGCTCTTCTGCCATGTTCAGCCCTGACAGTGTTACTAATGGAAGTGGGGGCTCTTCAGGCAAGACAGTAATGAGTCATGTTCATGGCAACTGCATAGACCAAGAAAAAGTGCCTTCAACTAGTTCCCTTACAGGAAACGTTACAAGTCGTAAAAGATTGTCCCTTTATCATTCAGGAGGACACCTTCCAACTATGAACCTTGAACAAGAATTTGCACTTCAATCAAAGAAAGACTTGGTGGATGCCCCTGATTTTACTGTGGATTATCAATGTGATGATCAATTTTATAACGACCTTGATCTTGATGAGTTGGAGGCACAAGCAATCTCACTTCATAAAAAGAAATTAGGTTTGTCAACTCAGAAGCAAGATGCAATCCCTCTACCTCCCTCTCTGAAGGAAGATAGCTTTTGGGCTCCATCGTTTGACCTCGGCATATGA 3711 0.4058 MIEMTSNNPYEIIDDDDEGFDWEAAAREIDVVCQQSKCVSSSGCDANGKAKAKGNNGDSSRQSTLDQFVVTAKKEAPVLQAQHEEEEVPTSAIHHIDADAAKTWIYPVNVPLRDYQFAITKSALFSNTLVALPTGLGKTLIAAVVMYNYFRWFPQGKIVFTAPSRPLVMQQIEACHNIVGIPQKWTIDMTGQISPPKRACFWKTKRVFFVTPQVLEKDIHSGICLVKYLVCLVIDEAHRATGNYSYCEAVRELMAVPVQLRILALTATPGSKKQTVQHVIDNLHVSKLEYRSEVNHDVIPYVHNRKIELVEVAMGQDAAEINDKLLDVIRPIVARLNDIGVIQNRNYRTLSPCTLLEIREKFRQGHRQDLSNINNVDVEGYFGVLITLYYIHKLLSSHGVRPAQEMLERKLKQGFFAKYMSKNEVMLKARQLMQQSLSHGASSPKLSKMLEVLHDHFKTNDPKSSRVIIFSNYRESVRDIMGALGNIGEPVRATEFIGQSSGKAMKGQSQKVQQAVLKKFRSGAYNVIVATSIGEEGLDIMEVDLVISFDANISPLRMIQRMGRTGRKHDGRVVILACEGSELNGYLRKKAKSKTISKHMRNGGVDSFNFHPSPRMIPHVFKPEVQYVEMSIEKFIPREKNVKDVPLPFSPSKDKLTVAEMDLLKMYFHSTEENTSRLSLIAFPYFQTFPSRIHKVKHSLRTMMLIDAMQHLQGLEMCPGNDKTTLQVLHPFLNYGNFLLFVSSTSDTESCYRHTMERNVDTVNCMNLDSHPLRIKTKDTIDLTIQEDSTFDDLIEHEEDSLQGDEIVPETPVANKSASNGGDNAGETTNLLVKTSLFPEDVCINGIREGEFSPRLTDFITSGVVPESPVDDEQEKSRGKSIIRDCILPVRLHEEQDTCPLSSMRSEKVVIEGSTGKNVSDSPVDNGTRTPLLELKNSAIKRRRIIISQTEEGHSHMSDPSFREESHLSSGKMPGTVSIQPLRKFKRLRKAADGDSKVNQENNDPTRYKHVQSKRKSTNDVRDFIEEEAEVSAEANVSSDEDGEDDVSYDSFIDDRTNPIGESQPEVSRVDMMAIYRRSLLSQTQINGSYSSSAMFSPDSVTNGSGGSSGKTVMSHVHGNCIDQEKVPSTSSLTGNVTSRKRLSLYHSGGHLPTMNLEQEFALQSKKDLVDAPDFTVDYQCDDQFYNDLDLDELEAQAISLHKKKLGLSTQKQDAIPLPPSLKEDSFWAPSFDLGI 1236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g01430 1236 MobiDBLite consensus disorder prediction 39 62 - -
Aip03g01430 1236 Pfam Type III restriction enzyme, res subunit 125 269 IPR006935 GO:0003677|GO:0005524|GO:0016787
Aip03g01430 1236 PANTHER FANCONI ANEMIA GROUP M PROTEIN 19 716 IPR039686 GO:0006281|GO:0043138
Aip03g01430 1236 PANTHER FANCONI ANEMIA GROUP M PROTEIN 850 1200 IPR039686 GO:0006281|GO:0043138
Aip03g01430 1236 MobiDBLite consensus disorder prediction 1033 1049 - -
Aip03g01430 1236 MobiDBLite consensus disorder prediction 949 1063 - -
Aip03g01430 1236 Gene3D - 438 603 IPR027417 -
Aip03g01430 1236 Gene3D - 108 302 IPR027417 -
Aip03g01430 1236 MobiDBLite consensus disorder prediction 986 1029 - -
Aip03g01430 1236 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 156 581 IPR027417 -
Aip03g01430 1236 Pfam Helicase conserved C-terminal domain 451 568 IPR001650 -
Aip03g01430 1236 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 445 616 IPR001650 -
Aip03g01430 1236 SMART helicmild6 479 569 IPR001650 -
Aip03g01430 1236 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 119 287 IPR014001 -
Aip03g01430 1236 MobiDBLite consensus disorder prediction 949 966 - -
Aip03g01430 1236 SMART ultradead3 108 308 IPR014001 -
Aip03g01430 1236 PANTHER FANCONI ANEMIA GROUP M FANCM FAMILY MEMBER 19 716 - -
Aip03g01430 1236 CDD SF2_C_FANCM_Hef 443 577 - -
Aip03g01430 1236 Gene3D hef helicase domain 316 437 - -
Aip03g01430 1236 CDD DEXDc_FANCM 110 291 IPR044749 GO:0005524
Aip03g01430 1236 PANTHER FANCONI ANEMIA GROUP M FANCM FAMILY MEMBER 850 1200 - -
Aip03g01430 1236 CDD FANCM_ID 319 426 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g01430 Aip-Chr3 15030511 15039962 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g01430 418 567 Eukaryotic Initiation Factors Gene Family AT3G13920 27.632 2.31e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g01430 K10896 - gmx:100820078 1472.22