Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g01413 ATGCAGCCCAGTAGTAGTGGCAGTGGCGGTGGCGGTAGCAGCGGTGGTGTTGCCAGGTTCCGTTCAACTCCAGCGAGCTGGTTAGAATCAATTTTTGTCAAGGAAGAAGTGGAAGGAGAAGGAGAAGAAGAAGCTGATCCTCCGGCGTTGAATAGCAGCAGCAGCATCCACCAGCAGGGATTCACTCAGCTTCTTTCCGGTGACACAAGCGGGGTTTTCCGCCACAATAGTTCTCCCGCCGATTTTGTATTCGACTACTCTCAACAATACGTATCCTCCAACTACGACTACGACTACGCCTACGCTTCTCCGGATAACAGCAGCGCGAATAATCCAATCCCGCAGGAAATTAAGCAGAGAGGGGTGAAAGTGGAGAATAAGATTATGAAGGATTCTGTGCCTTGGAAAGTTCGAGCAAAGCGTGGCTGTGCTACTCATCCTAGGAGTATTGCTGAAAGGGTTCGGAGGACTCGTATCAGTGATCGTATCAGGAAGCTGCAGGAACTTGTGCCAAACATGGATAAGCAAACTAATACTGCAGACATGTTAGATGAGGCAGTAGCTTATGTCAAGTCTCTCCAAAAGCAAATTGAGGAACTATCGGAGCAACAACAAAGATGTAATTGTGTGGTTCAAAGGAGTAGATAG 648 0.4815 MQPSSSGSGGGGSSGGVARFRSTPASWLESIFVKEEVEGEGEEEADPPALNSSSSIHQQGFTQLLSGDTSGVFRHNSSPADFVFDYSQQYVSSNYDYDYAYASPDNSSANNPIPQEIKQRGVKVENKIMKDSVPWKVRAKRGCATHPRSIAERVRRTRISDRIRKLQELVPNMDKQTNTADMLDEAVAYVKSLQKQIEELSEQQQRCNCVVQRSR 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g01413 215 Coils Coil 183 210 - -
Aip03g01413 215 Gene3D - 144 214 IPR036638 GO:0046983
Aip03g01413 215 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 146 211 IPR036638 GO:0046983
Aip03g01413 215 Pfam Helix-loop-helix DNA-binding domain 148 194 IPR011598 GO:0046983
Aip03g01413 215 MobiDBLite consensus disorder prediction 34 55 - -
Aip03g01413 215 MobiDBLite consensus disorder prediction 1 20 - -
Aip03g01413 215 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 12 207 - -
Aip03g01413 215 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 143 193 IPR011598 GO:0046983
Aip03g01413 215 SMART finulus 149 199 IPR011598 GO:0046983
Aip03g01413 215 PANTHER TRANSCRIPTION FACTOR BHLH117-RELATED 12 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g01413 Aip-Chr3 14814313 14817069 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g01413 71 210 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G09180 50.898 6.75e-50 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aip03g01413 HLH 6.9e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g01413 - - adu:107477635 368.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g01413 03 14814313 14817069 Aip03g01413 03 14814313 14817069 ECH