Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g01400 ATGGCTAACTCCTCCTTCTGCCTCCTCCTCTTCATTCTCTTCTGCTTCCTCTCTTCTCTTACCATCATAAATACACTTTCAACTGTTTCCATCTCCGAGACTTCCAACCAAACATTTATTTGTGCCTTACAGAATCCCAACCGACAAGTACAAGGACAATCTAACCTTAACTGTACAAGCTTTCCACCTGGAATCTCTCTTCAACTGAATCGTAACCTCTCATATGCTGAAATTGCTGGTGGCAGTGGATTCCTATGTGCATTGAGGACACCATCTTCTTCTAACTCCATCATGGGTTGTTGGAGATTCTCTGCCAATGCTACCAATGTTCCTTTCAAGCGTCTCTACCATGGACCTGTAATTCAAAACATGGATGCCGGAAACTCCCATGTTTGTGGCCTTGTAACTCAGAACAATAATAGCCTTAAGTGCTGGCAATGGCCTCGCTTCGATTCAAGCAAGGTCATCAACTTGTCAAGTATTGCTGTGGGAGAGAATTTCGTCTGCGGCTTATCGGAGTCATCAGGCAAGGTTACTTGCAGTGGTGGTGATACCGGAGTTGTTGGTAAGGAGCCTGGTGGCGAGCACTCTGCCATTGCAGCCGGGTTTAGGCATGCTTGTGCCATCTCCATTGATGGAAGCTTGGATTGCTGGGGTGACGTGGATCAGAAACCGCAGGGACCTTGTAGGAGTAATTGCCCATGCGGAATCTTAATAGGTTCTGCCACACTATGCTCTTCAGGAATGTCAATTTGTACATCTTGTTCCCCAAGAAATGAGGCTGGTTCGCCCTCGCCATCGCCACCACCCACAAGTAGTCCGACCGGGACTACAAAAAGTAGTGGATGGAGCAAGAAGATGGTTGCATTCTTGGTGATTGGATGTGTTGGTTGCAGTTCCCTGCTGCTAGTGTTTTGTTTCTTCATTTACTGGCACTGCAAGGGTAAAGGAGGCCGCGTCCACGACTCTGGGCGATTGGACGAATCAGGGACTGGGAGCGCCTCGCCAAGCCATCCGGAAGGCGGAGGCGGCCGTGGAGTTCTAGAGAAGCGTTTAAGCCACGTGATCAGCTTGGGAAACGGGAGCCATTTGGAGGAATACAGCCTTCAAGTGCTTCTTGAAGCCACCAACAATTTCTCAGAGGACAAGAAAATAGGGACAGGTAGCTTTGGGTCTGTATACCATGCCACACTGCAAGAAGGCAAGGAAGTCGCCATAAAAAGAGCCGAAAACTCTCCCCATTCGCCGTCCAATGCCACCAGAAGGCAGGAAGACAAGGACAGTGCATTTGTGAACGAGCTAGAGAGCCTCTCTAGGCTCCACCACAAGAATCTGGTGAGGCTATTGGGGTTCTATGAGGACGCCAACGAGCGCATATTGGTTTACGAGTACATGAACAATGGAAGCTTAAACGAGCATCTCCACAAGCTTCATACTTCAGCATTAATGTCTTGGGCCGTGCGCATCAAAGTAGCACTTGATGCAGCAAGAGGCCTAGAGTACCTTCACCAATACGCAACCCCACCAATCATTCACCGCGACATAAAATCATCAAACATACTGTTAGACTCAAAGTGGACTGCCAAAGTTTCTGATTTTGGACTCTCCCTCATGGGTCCTGAAGACGAAGAGTCGCATCTTTCGCTCCTCGCTGCCGGCACGGTTGGTTACATGGACCCTGAATACTACAGGCTTCAAATGCTAACTACAAAGAGCGATGTCTACAGTTTCGGAGTAGTGCTGCTGGAAATTCTGTCTGGCCACAAGGCCATACATAAAAATGAGAATGGAGTCCCAAGAAACGTGGTGGATTTCATGGTGCCATATATTAATCAAGATGAGCTTCACAGGGTGCTGGACCCAAGAGTGCCGCCGCCAACGCCCTACGAGATAGAGGCGGTGGCGTACGTTGGTTATTTGGCAGCAGATTGTGTGAGGCTGGAGGGCAGAGATCGTCCAACAATGACCGAAGTTGCAAATTACTTGGAAAAAGCATTGGCTGTGTGTTTGGCCAAACCATCCATGTCAAGATCCACAACCAACACTTCTGATGAATGA 2058 0.4864 MANSSFCLLLFILFCFLSSLTIINTLSTVSISETSNQTFICALQNPNRQVQGQSNLNCTSFPPGISLQLNRNLSYAEIAGGSGFLCALRTPSSSNSIMGCWRFSANATNVPFKRLYHGPVIQNMDAGNSHVCGLVTQNNNSLKCWQWPRFDSSKVINLSSIAVGENFVCGLSESSGKVTCSGGDTGVVGKEPGGEHSAIAAGFRHACAISIDGSLDCWGDVDQKPQGPCRSNCPCGILIGSATLCSSGMSICTSCSPRNEAGSPSPSPPPTSSPTGTTKSSGWSKKMVAFLVIGCVGCSSLLLVFCFFIYWHCKGKGGRVHDSGRLDESGTGSASPSHPEGGGGRGVLEKRLSHVISLGNGSHLEEYSLQVLLEATNNFSEDKKIGTGSFGSVYHATLQEGKEVAIKRAENSPHSPSNATRRQEDKDSAFVNELESLSRLHHKNLVRLLGFYEDANERILVYEYMNNGSLNEHLHKLHTSALMSWAVRIKVALDAARGLEYLHQYATPPIIHRDIKSSNILLDSKWTAKVSDFGLSLMGPEDEESHLSLLAAGTVGYMDPEYYRLQMLTTKSDVYSFGVVLLEILSGHKAIHKNENGVPRNVVDFMVPYINQDELHRVLDPRVPPPTPYEIEAVAYVGYLAADCVRLEGRDRPTMTEVANYLEKALAVCLAKPSMSRSTTNTSDE 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g01400 685 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 227 674 IPR044815 GO:0004674
Aip03g01400 685 Gene3D Phosphorylase Kinase; domain 1 348 464 - -
Aip03g01400 685 Pfam Protein kinase domain 379 660 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip03g01400 685 ProSitePatterns Serine/Threonine protein kinases active-site signature. 510 522 IPR008271 GO:0004672|GO:0006468
Aip03g01400 685 ProSitePatterns Protein kinases ATP-binding region signature. 385 407 IPR017441 GO:0005524
Aip03g01400 685 SUPERFAMILY RCC1/BLIP-II 107 234 IPR009091 -
Aip03g01400 685 MobiDBLite consensus disorder prediction 260 281 - -
Aip03g01400 685 PANTHER OJ000114_01.11 PROTEIN 6 221 - -
Aip03g01400 685 PANTHER OJ000114_01.11 PROTEIN 227 674 - -
Aip03g01400 685 Gene3D Transferase(Phosphotransferase) domain 1 465 676 - -
Aip03g01400 685 ProSiteProfiles Protein kinase domain profile. 379 666 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip03g01400 685 Gene3D - 27 289 IPR009091 -
Aip03g01400 685 MobiDBLite consensus disorder prediction 322 346 - -
Aip03g01400 685 SUPERFAMILY Protein kinase-like (PK-like) 359 663 IPR011009 -
Aip03g01400 685 Pfam Regulator of chromosome condensation (RCC1) repeat 198 220 - -
Aip03g01400 685 CDD STKc_IRAK 385 664 - -
Aip03g01400 685 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 6 221 IPR044815 GO:0004674
Aip03g01400 685 SMART serkin_6 379 662 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip03g01400 685 MobiDBLite consensus disorder prediction 407 427 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g01400 Aip-Chr3 14601523 14603823 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g01400 69 680 Receptor kinase-like Gene Family AT5G47850 48.357 8.78e-177 521
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Aip03g01400 Pkinase 4.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g01400 - - jre:109000945 759.985
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g01400 03 14601523 14603823 Aip03g01400 03 14601523 14603823 ECH