Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g01395 ATGACTCCAGTGAATTTGGCAGGGCAGTTCGGAGACACCACATACACCAAGGTTTTTGTTGGAGGCTTGGCTTGGGAGACTCAGAAAGAGACCATGAAGAAATACTTTGAGCAATTCGGTGAGATCTTGGAAGCTGTTGTCATCACTGACAAAGCCACCGGAAGATCTAAAGGCTACGGTTTTGTCACGTTTCGCGAACCAGAAGCTGCCATGAGAGCTTGTGTGGATGCTGCTCCAGTAATTGATGGAAGAAGAGCTAACTGCAACCTTGCTTCTTTGGGTGTCCAGAGATCTAAGCCTTCAACCCCAAAGCATGGAGGAAGTGGAAGGAACTTTAGAGTAATGGGGTCTTTCCAGACAGGGTTTGGAGGGGGAGTGGGATCAGCTTTTCCATCGGCAGCAACCTTCCCTCATTATGCTATCCAGCAAGGGATACCATATAACGTTTATGGGTACTCTCCTTACTCACCGGATTACACTTACCCCACGAGCTACTACAGTGTGTATGGAGGTGCAGCAACAGCACAGTACCCAGTGTATGGAACGGGACACGCTGGAGGAATGATGACGGGTGCCGGGGCAGCAGCGGCGGCGGCAGCAGCCACGGCGTTTTATCCGTATATGCAGTACGGAGGAGAAGGGAGTGGCGGAGGTGGATCAACCGGCGGGAGCTATACTACTTCAGGGCAGGGTTATGGTGTGAATTATCCGCCTCATCAACTGTTTCAGTATTCTCCGATTGCTTCAACCGGTGGCTATGCTCAGCACTATGCAACTCCCATGTCCCTTGCTCCTTCCCCTGCCTTGCAATCAGGCGTGACAATGGCTCTTCAAGCTCCAATTCCTCATCGCTAG 855 0.5135 MTPVNLAGQFGDTTYTKVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHGGSGRNFRVMGSFQTGFGGGVGSAFPSAATFPHYAIQQGIPYNVYGYSPYSPDYTYPTSYYSVYGGAATAQYPVYGTGHAGGMMTGAGAAAAAAAATAFYPYMQYGGEGSGGGGSTGGSYTTSGQGYGVNYPPHQLFQYSPIASTGGYAQHYATPMSLAPSPALQSGVTMALQAPIPHR 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g01395 284 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 73 IPR000504 GO:0003723
Aip03g01395 284 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 100 IPR000504 GO:0003723
Aip03g01395 284 Gene3D - 7 112 IPR012677 -
Aip03g01395 284 SMART rrm1_1 17 89 IPR000504 GO:0003723
Aip03g01395 284 PANTHER BOULE-RELATED 1 279 IPR037366 GO:0003729
Aip03g01395 284 PANTHER OS01G0876800 PROTEIN 1 279 - -
Aip03g01395 284 CDD RRM_RBM24_RBM38_like 16 91 - -
Aip03g01395 284 SUPERFAMILY RNA-binding domain, RBD 15 103 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g01395 Aip-Chr3 14511662 14518162 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g01395 12 92 C2H2 Transcription Factor Family AT2G19380 43.210 5.75e-14 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g01395 - - adu:107477578 484.567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g01395 03 14511662 14518162 Aip03g01395 03 14511662 14518162 ECH