Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g01391 ATGTCCATAACCGAGGAAAGTGACCGACCCGACCCGTCCGCTAAACGGGGCACCCAGAAACGTTCCCGCCAGCGCGATACCGCATTCCGCGGGGTTCGAAAACGCAGCTGGGGACGCTACGTCTCCGAGATCAGAATGCCCGGCCAGAAAACCCGTGTATGGCTCGGCTCATTCGGCTCGCCTGAGATGGCGGCTCGTGCATACGACTCCGCCGCTTTCTTCCTCAAAGGAAACTCCGCCACCCTCAATTTCCCCGACCTTGTTCACTCGCTGCCACGCCCTCTCTCGTCGTCCAGGCGTGACATACAGTCGGCGGCGGCCAAAGCGGCCGTGGAGGTGGTGGATGCACGGAGCGGGCATGACCCGACCCGGTCGCCCGGGAAGGCGGATTCGGTGGAGTGGTGGGAAGGTTTGTTGGGAGAAGAGGAAGAGTCAGAGTCGGTTTGGAGAACGACGTGGTTTGAGGATGTGAAGGAATGTGGTCCTATGAATCTCAGTCCTGCAGGTTCTGTTGGAGAATTGACATGGAACGAAGTCTTCAATTTCAACGACGACGTTCTGTTATTCTCCTAA 573 0.5829 MSITEESDRPDPSAKRGTQKRSRQRDTAFRGVRKRSWGRYVSEIRMPGQKTRVWLGSFGSPEMAARAYDSAAFFLKGNSATLNFPDLVHSLPRPLSSSRRDIQSAAAKAAVEVVDARSGHDPTRSPGKADSVEWWEGLLGEEEESESVWRTTWFEDVKECGPMNLSPAGSVGELTWNEVFNFNDDVLLFS 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g01391 190 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 18 132 - -
Aip03g01391 190 PRINTS Ethylene responsive element binding protein signature 29 40 IPR001471 GO:0003700|GO:0006355
Aip03g01391 190 PRINTS Ethylene responsive element binding protein signature 51 67 IPR001471 GO:0003700|GO:0006355
Aip03g01391 190 ProSiteProfiles AP2/ERF domain profile. 28 85 IPR001471 GO:0003700|GO:0006355
Aip03g01391 190 MobiDBLite consensus disorder prediction 1 31 - -
Aip03g01391 190 SUPERFAMILY DNA-binding domain 28 86 IPR016177 GO:0003677
Aip03g01391 190 SMART rav1_2 28 91 IPR001471 GO:0003700|GO:0006355
Aip03g01391 190 Gene3D AP2/ERF domain 28 86 IPR036955 GO:0003700|GO:0006355
Aip03g01391 190 CDD AP2 29 87 IPR001471 GO:0003700|GO:0006355
Aip03g01391 190 Pfam AP2 domain 28 77 IPR001471 GO:0003700|GO:0006355
Aip03g01391 190 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF036-LIKE 18 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g01391 Aip-Chr3 14450820 14452031 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g01391 14 110 AP2-EREBP Transcription Factor Family AT5G11590 56.436 1.17e-32 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Aip03g01391 AP2 8.7e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g01391 K09286 - gmx:100783790 176.407
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g01391 03 14450820 14452031 Aip03g01391 03 14450820 14452031 ECH