Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g01389 ATGGTGGTCAACGAGAGGCCTACGAAGAGGATGAAGAGAAGAGTAACCGCCGATCTCCACGACTTTCTCACTTTCCCTTCCGCCGCCGGCGCTTCCTTGGACTCACCCTTTCGCAACTGTGTCCAGCGGTTCCTGGCAGACCATGGTCGCATAACGTTTCCGCCTTCACTCTTCCCGGCGCTGATGACGTGGCAGATCTTGTTCCGGGTTGGTGACCTTGTCGAAGGCCCGGATCTCTCGCCTGCGGTGGTCACGCTTGACATTGTGGAGGAAGATGTCACGCGCTCTCGAAGTTCAGTGTACTGTGACCAGTGTCGAGTCGTTGGGTGGAGCGGTCACCCCGTCTGTCGCAAGCGATATCATTTCATTATCCGGGCTGCCAGTAAATCCATTGAGTCTTACCAAAGACCTTGTTCCAGATGTGAAAATCTTGTCCAACTATCTGAACCAAGGTGCAAATCATGTGACTTCAACATTACTGTGGATGATCTTGAGGATTGGGTGTATCAACAAATCGACGATAACACCCATCTCCTGCATGGTGTTGTCCACTCCAATGGTTATGGTCACCTGCTTACTCTCAATGGAAGAGAAGGTGGCTCAAAGCTTCTCTCTGGATTTGATATTATGGGATTTTGGGATAGACTGTGTTCTGCAATTTCTGTTAGGAAGGTTAGTGTGATGGATTTGTCCAAGAAATTTGGGTTGGAATATCGAGTGCTCCATGCAATCACCAATAGCCGTTCGTGGTATGGCAATTGGGGTTATGAATTTGGAAATGGCAGCTATGCTCTTACACAAGATGCCTACCAGAAAGCAGTGAATACCCTGTCAGATATGCCCTTGTCCTCATTTTCATTCCAGGGTCGGGGACCACGAAGCCGCCTTCAGTGTGTTATTTCTCTTTACCAGTCGTTGGCTGAAACTGAACTTCTAACAATCAAAGACCTCTTCTCCTTTTTGTTGACACTGGTCCATGAATTTCGCAAGATGATGACGAAAAAAATATCTAAACAGGATGAAGGCTCCAACAAATGTAATTTATTGTGTGCTTGGACAAGACATGATGTTGAGGATGTGCAACAGGCTTTGATTAAGGTATTGCTTGCATCAGCTTCCTGTAGGGAGGTCAAATGGGTTGCTAGACGTGTTCTCAAGGGTGCAGTTTGCAGGGGTGTTTCATCTCCAGAGCTTCTAGACTACAGTCTTAAGCATTTGGAAGGAAAATTAGCTGCCAACGGAATGGTAGTTGCTTCACGATGCAATCCAAATACTAGTGCTATAGAATTCAGGCTAGAACCGTTCTGTGATGGATTTACGCGAAATTCAAGCCATCCATCAGAAGAGCAAGTCATATCCGATCTGGCATTTTTATTTGATTCGATAATTCACCCAGACAAAATGGTGAGCTATAGACCCAAGGTTATGAGGAAAAGTGTGGCTGATTCAGCAAGGAAGCTTCTTGACTGTAAGCAGTTTGTGAAAGAGTACAAGCCAGAGGTGGCCATGGAACAACCTCCGGTCATCAGACTGTGGTGTCAGGTTGAACTTTCTGATCAGCCGAAAGATGATCCATCCCCGCCACCAGAACTAATCGTGTTGCCTTTGAGTGCTACTGTTGCTGACCTTAAGAGGGAGGTCACTAGTGCTTTTCAAGAGGTGTATGCAATGTACAAGAGGTTTCAAGCTGAGGAAGTAATAGGGTATGGTTCAATTAGTGACTCGCTCACCTTAAAATTCTTGCTTGGAACAAGTGCGATGGTCAAAATTCAAGGCAAGTGTCCAGCCAAGTATGGTCTAAGCCGCTTCCGAATGGAACGGGGTACAGAGACATGGAGAGTTGACTGCCCCTGTGGGGCTAAGGACGATGATGGAGAAAGAATGTTAGCATGTGATACTTGCAGTGTTTGGCAGCATACGAGATGCGCGGGAATTGATAATTGTGATGCAATACCTTCTAAGTTTGTGTGTCTTAGATGCCTTAGCTCGTACCGTCAGGAAGCTGTAAATTTGCCAGACTCCGATGTTGAAGCTAACAAGTCTTACAAATTATCGAATGCTTCTTGCAAAGATGAAGCAGTGGCAACGGACTGTGCAGCAGTTGCTTGTAACATAACTGTAGATTTTGGTGTACGATGA 2139 0.4624 MVVNERPTKRMKRRVTADLHDFLTFPSAAGASLDSPFRNCVQRFLADHGRITFPPSLFPALMTWQILFRVGDLVEGPDLSPAVVTLDIVEEDVTRSRSSVYCDQCRVVGWSGHPVCRKRYHFIIRAASKSIESYQRPCSRCENLVQLSEPRCKSCDFNITVDDLEDWVYQQIDDNTHLLHGVVHSNGYGHLLTLNGREGGSKLLSGFDIMGFWDRLCSAISVRKVSVMDLSKKFGLEYRVLHAITNSRSWYGNWGYEFGNGSYALTQDAYQKAVNTLSDMPLSSFSFQGRGPRSRLQCVISLYQSLAETELLTIKDLFSFLLTLVHEFRKMMTKKISKQDEGSNKCNLLCAWTRHDVEDVQQALIKVLLASASCREVKWVARRVLKGAVCRGVSSPELLDYSLKHLEGKLAANGMVVASRCNPNTSAIEFRLEPFCDGFTRNSSHPSEEQVISDLAFLFDSIIHPDKMVSYRPKVMRKSVADSARKLLDCKQFVKEYKPEVAMEQPPVIRLWCQVELSDQPKDDPSPPPELIVLPLSATVADLKREVTSAFQEVYAMYKRFQAEEVIGYGSISDSLTLKFLLGTSAMVKIQGKCPAKYGLSRFRMERGTETWRVDCPCGAKDDDGERMLACDTCSVWQHTRCAGIDNCDAIPSKFVCLRCLSSYRQEAVNLPDSDVEANKSYKLSNASCKDEAVATDCAAVACNITVDFGVR 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g01389 712 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 601 667 IPR013083 -
Aip03g01389 712 PANTHER PHD FINGER PLANT-LIKE PROTEIN 1 680 - -
Aip03g01389 712 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 1 680 - -
Aip03g01389 712 SUPERFAMILY FYVE/PHD zinc finger 605 663 IPR011011 -
Aip03g01389 712 SMART PHD_3 615 661 IPR001965 -
Aip03g01389 712 ProSitePatterns Zinc finger PHD-type signature. 616 660 IPR019786 -
Aip03g01389 712 Pfam PHD-finger 616 662 IPR019787 -
Aip03g01389 712 CDD PHD_MMD1_like 615 660 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g01389 Aip-Chr3 14413114 14416325 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g01389 80 660 PHD Transcription Factor Family AT5G22260 28.000 3.67e-84 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Aip03g01389 PHD 3.8e-07 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g01389 - - gmx:100780558 1144.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g01389 03 14413114 14416325 Aip03g01389 03 14413114 14416325 ECH