Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g01366 ATGGAGAATATGAATAGTTTTTGTCATGTTCCCCCGGGTTTTAGATTCCACCCGACGGATGAAGAACTTGTTGATTACTACCTTAGGAAGAAGGTTAGTTCAAGGAAGATTGAGCTTGATGTAATCAAAGATGTTGACCTCTACAAAATTGAGCCATGGGACCTTCAAGAGATATGCAGGATAGGAAGAGAAGAGGAGAATGAATGGTATTTCTTTAGCCACAAGGATAAGAAGTATCCAACAGGAACAAGAACAAATAGGGCAACAGCAGCTGGGTTTTGGAAAGCAACGGGAAGAGACAAAGCTATATATTCAAAGCATGATCTCATAGGGATGAGGAAGACATTAGTCTTTTATAAAGGGAGAGCTCCTAATGGACAAAAATCGGATTGGATCATGCACGAATATCGCCTTGAAACCGATGAAAATGCCGCACCACAGGAAGAAGGATGGGTGGTGTGTAGAGTATTCAAGAAGAGAGTAACAACGATGCGTAAAATGATGATGAGAGAGCATGATGAGTCTCCTAATTCTTCTTGTTGGTACGATGACCAAGAATTCATGATGATGGAATCGCCAACAAAGCAACAATCCTCTATTCTTCTTCATCAATCCACCAATAACCATTCCAATTTGATGCAGCTACCACCGTATCCTCTCATCAAGAAAGAGCTTCATCACCCATCATCATCATCATCGTCATACCCCTTCCTTCAGCTTCCACTCTTAGAGTCTCATCAACAATCTGCTGCTGCACCTTCCTCCATTTCTGAACAACTCATCATGCCACCACCAATTGGAGGAGGAGAACAAGTCCCGAGTTTTCAGTCATTCTTCAATAATGAACAACAAGAAGTAGGAGTTCTTGATTGGAGAGTTCTTGACAAGTTTGTTGCTTCACAACTTAGTCAAGATGATAATCATGCATCCTCTAATAGTATTGTACAAGATCTCACACAGGAAATTGTTATGGTGCCTCACAATGATGCTGCATCAACATCAAACTCCCTCACCTCCCCAATTGATTTGTGGAAATAG 1038 0.4123 MENMNSFCHVPPGFRFHPTDEELVDYYLRKKVSSRKIELDVIKDVDLYKIEPWDLQEICRIGREEENEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAIYSKHDLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLETDENAAPQEEGWVVCRVFKKRVTTMRKMMMREHDESPNSSCWYDDQEFMMMESPTKQQSSILLHQSTNNHSNLMQLPPYPLIKKELHHPSSSSSSYPFLQLPLLESHQQSAAAPSSISEQLIMPPPIGGGEQVPSFQSFFNNEQQEVGVLDWRVLDKFVASQLSQDDNHASSNSIVQDLTQEIVMVPHNDAASTSNSLTSPIDLWK 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g01366 345 Pfam No apical meristem (NAM) protein 11 138 IPR003441 GO:0003677|GO:0006355
Aip03g01366 345 ProSiteProfiles NAC domain profile. 10 159 IPR003441 GO:0003677|GO:0006355
Aip03g01366 345 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 7 321 - -
Aip03g01366 345 Gene3D NAC domain 19 163 IPR036093 GO:0003677|GO:0006355
Aip03g01366 345 SUPERFAMILY NAC domain 7 159 IPR036093 GO:0003677|GO:0006355
Aip03g01366 345 PANTHER NAC DOMAIN-CONTAINING PROTEIN 7-LIKE 7 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g01366 Aip-Chr3 14027288 14031825 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g01366 4 345 NAC Transcription Factor Family AT1G12260 55.710 6.11e-128 368
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Aip03g01366 NAM 9.6e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g01366 - - gmx:100815845 402.905
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g01366 03 14027288 14031825 Aip03g01366 03 14027288 14031825 ECH