Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g01361 ATGACGGACATAATGGCGAGTGAGCCGTACGCCGTCGTGGAGCGCGAAGATTACGGCGACCTCAGCTGCGAGCAATGCGGCTCCGGCGAGCGGCCGGAGGAGCTGCTTCTCTGCGACAAATGCGACAGAGGGTTCCACATGAAATGCGCGAGGCCTATCGTGGTTAGGGTTCCTATTGGATCCTGGCTTTGCCCTGAATGCGTTGGAAGCAACAACAGACAGAGAAGAATAAAAAGCTTCTCGCAGCGTAAGTTAATTGATTTCTTCGGGATTCAGAGGAGCGACAATGATCACGTTAGAGCTGCTTCTTCTCAAGGTAATGACCGCGAGTTTAAGCATTTGCTAATCAACGTTCTTCTTTGA 363 0.5152 MTDIMASEPYAVVEREDYGDLSCEQCGSGERPEELLLCDKCDRGFHMKCARPIVVRVPIGSWLCPECVGSNNRQRRIKSFSQRKLIDFFGIQRSDNDHVRAASSQGNDREFKHLLINVLL 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g01361 120 Pfam PHD-finger 23 68 IPR019787 -
Aip03g01361 120 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 83 IPR013083 -
Aip03g01361 120 PANTHER HISTONE ACETYLTRANSFERASE 16 101 - -
Aip03g01361 120 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATXR6 16 101 - -
Aip03g01361 120 SUPERFAMILY FYVE/PHD zinc finger 10 75 IPR011011 -
Aip03g01361 120 SMART PHD_3 22 68 IPR001965 -
Aip03g01361 120 ProSiteProfiles Zinc finger PHD-type profile. 20 70 IPR019787 -
Aip03g01361 120 ProSitePatterns Zinc finger PHD-type signature. 23 67 IPR019786 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g01361 Aip-Chr3 13941762 13942244 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g01361 20 86 C2H2 Transcription Factor Family AT3G01460 37.313 1.02e-09 53.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Aip03g01361 PHD 2.3e-11 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g01361 K24406 - aip:107632561 252.677