Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g01341 ATGGAGAAAAATAACAACATAACCTGCAAAATCTGCAATAAGTGTTTCTCCACCGGAAAAGCCATAGGGGGCCACATGAGATCTCACTTGGTCAAATTGCCAATACCTCCCAAGCCTGACCCAGAGAATCAAGCACTTGACAACTTTATCAAGTTAACCAACCATGCAATTCAAGTTCCTTCCTCAATGAATTTCCATCCCGAAATGAAACCAGCACAAAATCTTCAATCTCCGAAATACAGCTTCTCAGCCTTTTTTTCAAAAGTAAACAAAGAAAATAGATTTCTGCCATACCCTAAAAACCCAACCCGCAAAAGATCCAAATGTCGCCGACAATTTATTAAAGCAGTTGAGAAAAGATCTGGGCCAAAACAGGAGAGTTCAAAATCTGAAACCCCTCGTGCAAAAGAAGCAGCTAGGTCCTTGATATTGCTTTCCAAAGATAATTGGCCAGCAAGCAAAGAGATCAAGACGCAAGAGATGGAGGGAGCCAACCAAATGTTTACAAAAGATAATGAAGATGATAAAGATGCCTTACTTGTTCAGACTCCCCCTCAAGTTAAGTTCAGGTGTTTAGATAACAAACCGGTCGAATGCCCATGGTGCTCCAAGATGTTCAAATCTAAACAAGCACTCGGCGGGCACAAAAAGGTACACTTAAACAACCCTAAGGTTGCTAATGCTCACAATAAATTTGTGGACAAGTCGCTAGACCTTAATTTTCCAGCTTTTAGAGATGATGAAGATGTTGGCCAAATCAATTTTCCAACCGTGGCCAATAGAAAATAA 789 0.4056 MEKNNNITCKICNKCFSTGKAIGGHMRSHLVKLPIPPKPDPENQALDNFIKLTNHAIQVPSSMNFHPEMKPAQNLQSPKYSFSAFFSKVNKENRFLPYPKNPTRKRSKCRRQFIKAVEKRSGPKQESSKSETPRAKEAARSLILLSKDNWPASKEIKTQEMEGANQMFTKDNEDDKDALLVQTPPQVKFRCLDNKPVECPWCSKMFKSKQALGGHKKVHLNNPKVANAHNKFVDKSLDLNFPAFRDDEDVGQINFPTVANRK 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g01341 262 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 195 248 IPR044303 GO:0006355
Aip03g01341 262 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 191 IPR044303 GO:0006355
Aip03g01341 262 SMART c2h2final6 7 29 IPR013087 -
Aip03g01341 262 SMART c2h2final6 197 219 IPR013087 -
Aip03g01341 262 ProSiteProfiles Zinc finger C2H2 type domain profile. 197 224 IPR013087 -
Aip03g01341 262 Pfam C2H2-type zinc finger 198 219 - -
Aip03g01341 262 Pfam C2H2-type zinc finger 9 29 - -
Aip03g01341 262 ProSiteProfiles Zinc finger C2H2 type domain profile. 7 34 IPR013087 -
Aip03g01341 262 MobiDBLite consensus disorder prediction 116 137 - -
Aip03g01341 262 ProSitePatterns Zinc finger C2H2 type domain signature. 9 29 IPR013087 -
Aip03g01341 262 PANTHER C2H2 AND C2HC ZINC FINGER PROTEIN 1 191 - -
Aip03g01341 262 PANTHER C2H2 AND C2HC ZINC FINGER PROTEIN 195 248 - -
Aip03g01341 262 MobiDBLite consensus disorder prediction 116 136 - -
Aip03g01341 262 ProSitePatterns Zinc finger C2H2 type domain signature. 199 219 IPR013087 -
Aip03g01341 262 SUPERFAMILY beta-beta-alpha zinc fingers 8 219 IPR036236 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g01341 9 255 C2H2 Transcription Factor Family AT1G02030 25.407 5.22e-16 73.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aip03g01341 zf-C2H2_6 6.4e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g01341 - - adu:107495627 489.189