Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g01340 ATGGAAGAAGGGATGGGAGAATCCACGACTAGGGTTTGCCCTTCTAATCTTCGGTATGAGCAGCAACCGCAGCACACTGCGGGTACCATCAAGAAGATTCGACTGGAGAACTTCATGTGCCATGAAAACTTCGAGATGGAGTTCGTAAACGCCGTCAATTTCGTACTTGGTCAAAACGGAAGTGGTAAGAGTGCCATCCTAACAGCATTGTGTGTTGCATTTGGTAGTCGAGCTAAAAAGACCGATAGGGCAAACCATTTGAAGGATCTCATTAAAAAGGGTTGCAGCAATGCTGTCATCCATGTTGAAATTCAAAATGAAGGAGAAGATGCGTTTAAGCCTGAAATATATGGTGACGTTATCATTGTTGAACGTAGGATATCCGTATCTGCAAACTCCATTATATTAAAAGATCACCAAGGAAAGAGAGTGGGCCATCGGATAGCGGATCTCCGGGAAATGGTTGAGCATTTTAATATTGATGTGGATAATCCGTGTGTAATTATGAGTCAAGACAAAAGCAGAGAATTTTTGCATTCTGGGAACGATAAAGATAAATTTAAGTTTTTTTACAAGGCCACACTCCTACAGCAAGTCAATGATCTCTTGGAAAACATTTCTAAAGAAATAGGTGTCGCACATGGCATAGTTAAAGACTTAGAGGGTTCAATAAAGCCTGTTGAGAAGGAGCTTAAGGAGCTGCAAGACAAAATCAAAGCTATGGAACATATTGAACAAATGTCTGTAGACATTCAAAAGTTAAAGAAGAAACTTGCATGGTCTTGGGTTTATGATGTGGATAAGAATCTTCAGGCACAAAGTGCAAAGATAGATAAGCTAAAGAACCGGATACCTGCCTGCCAAGCTAAGATTGATCAACAATTGAATGATATTGAAAGATTGAAGGAAGGCATCTCTGAGAAGAAGGACGTAATTGCAATTATGATGGAAGAGTATACACAACTTAATCAAATTATTGCTGATCAAAATCAGCCTTTGTCCTTGGCTAGAAAAGAAGCTCTTGAACTTGAGCATGACTGCAATTCCAAAACTAGCAAAGTACAGAAGATGTTACAGCGACTTAAAAAACTTGAACAAGAAGTGCAGGATCTTCATGAGCAGCATGTGAAAAATACTCAGGCTGAAAAATCTGACTTGGAGGAGAAACTTAAGGGTCTCCAACATGAGGTTCATGCTGCTGAGCTAGACTGGGGAAGGTTAAAGGAGGAAGAGACTAAGTTAATGAACAACATAAATTTGCAAAATGAAGAAATTAAGACAATTGTTTATAAGATCCAAGATCATGAAAACAATTGTAATGAAATCTCCAAGCAAATCCGCGACTATGAACAGAAACAAGGCAATAAGATTGCAGGTTTTGGAGGACAAAGAGTAATACATCTGATATATTTAGTTGAGAAAAATCATCAAAGGTTTAAGATGCCACCGATTGGTCCAATTGGTGTCCATTTGAATTTACTTGATGCTAAAAAATGGGCTGCTACTGTTGAACATGCCATCGGGGGATTGCTCAATTCCTTTATAGTAACTGATCATAAGGATTTTCTTCTTCTGAAACAATTGGCGAAGGAAGCAAACTATAGGAACCTTCAAATTATTATTTATGATTTTTCAATACCGAGGTTAAAAATACCACAGCACATGCTTCCTGAGACAAATCATCCATCAACACTTTCCCTTTTACAATCTGAGAACGACACTGTGATTAATGTCTTAGTGGATCTAGGAAATGTTGAGAGACAAGTACTCGTGAAGGATTATGATACTGGCAAAGTGGTTGCTTTTAATCAAAAGCCTCGGAATCTGAAAGAGATCTACACAGCAGATGGCAAGAAAATGTTTTGTCGAGGTGGTGTGGAGACTACTCTTCCACTAAAGGGGAAGGGACCCGGCCGTTTATGTAGTTCTTTTGAAGATCATATTAAGGATCTTCGAAGTAAGGCATCTGATGAACAAAATGCAGCTAATGAGGGTAAAAGTAGAAAACGACAGGCAGAGATCAAACTTCGGGAACTAGAATCAAATCTTACATCTGTAAAGAGGCATTGTGAAAATGTTGGACGAAGTTTATCTTCTAAGAAGCTAGCTTTGGAGGAGGCAATGCATCAGCATGCTGCTGAAAATAGCTCAATTCCTTCCTCATCTGTTGAGGAGCTTGATGTAGAAATCACAGAATTCAAGAAGAAATTAGAAGAAGAACAAATATTGTTGGAAGCCCTTCGACAAAGGAAGGATGAAGCATCGGGCAAAGCAAAGGATCTTAAAGTAAAATTTGACAAGCTCCGTGGGTCAGCAGAGGACAAATTTACTGCGATTGAAAAGGCTGGGAGTCAATGTAGGAAAATTGAAAGTGAACTGGAGTCGGCTGAACAGGGAAAGGCTCACTATGAAAATCTCATGGAAAACAAGGTCCTACCTGCTATTAAGAAGGCCGAGGAAGAATATCAGGAGCTTACAAAAATGCGTGAGGAATATGCTAAGAAGGCTTCCATAATTTGCCCCGAGTATGAAATCAATGATTGTGATTCATTAGAAGGTTGTGATATGAAAACCCCAGATCAAATCAGTGCTGAATTAAAAGAACTAAATCAGAAAGTTGAGCATGAGTGCCGAAGGCACTCTGAACCAATTGCTGATCTTAGGATGCTTTATGAGAAAAAACAACGCAAGATTATGAAGAGGCAGAAAGTGTACAAAGCTCTTCGACAAAAGTTGGATGCATGCCAGAGAGCCTTAGAGATACGAGGGAAGAAGTTTAAGAGCAATGCAACTCGCCTGAAGCAGCAGCTTTCTTGGAAGTTTAATGATCATCTGAGGAAGAAAGGGATCAGCGGACTTATTAAAGTTAATTATGAGGAGAAAACCTTATCTATTGAGGTTCAAATGCCTCAAGATGCATCTAACAGAGCTGTTCGAGACACCAGGGGGCTTTCAGGTGGGGAGCGTTCTTTTTCAACTTTGTGCTTTGCATTAGCTCTCCATGAAATGTCAGAATCCCCCTTCAGAGCAATGGACGAATTCGATGTCTTTATGGATGCAGTAAGCCGAAAAATCAGCTTGGAGACACTGGTTGATTTTTGTGTGGCACAAGGATCCCAATGGCTATTCATCACCCCCCATGATACCAGCACGGTGAAGCCAGGACCTAAGGTAAAGAAGATGCAAATGCTAGCCCCTCGCTCTTGA 3207 0.401 MEEGMGESTTRVCPSNLRYEQQPQHTAGTIKKIRLENFMCHENFEMEFVNAVNFVLGQNGSGKSAILTALCVAFGSRAKKTDRANHLKDLIKKGCSNAVIHVEIQNEGEDAFKPEIYGDVIIVERRISVSANSIILKDHQGKRVGHRIADLREMVEHFNIDVDNPCVIMSQDKSREFLHSGNDKDKFKFFYKATLLQQVNDLLENISKEIGVAHGIVKDLEGSIKPVEKELKELQDKIKAMEHIEQMSVDIQKLKKKLAWSWVYDVDKNLQAQSAKIDKLKNRIPACQAKIDQQLNDIERLKEGISEKKDVIAIMMEEYTQLNQIIADQNQPLSLARKEALELEHDCNSKTSKVQKMLQRLKKLEQEVQDLHEQHVKNTQAEKSDLEEKLKGLQHEVHAAELDWGRLKEEETKLMNNINLQNEEIKTIVYKIQDHENNCNEISKQIRDYEQKQGNKIAGFGGQRVIHLIYLVEKNHQRFKMPPIGPIGVHLNLLDAKKWAATVEHAIGGLLNSFIVTDHKDFLLLKQLAKEANYRNLQIIIYDFSIPRLKIPQHMLPETNHPSTLSLLQSENDTVINVLVDLGNVERQVLVKDYDTGKVVAFNQKPRNLKEIYTADGKKMFCRGGVETTLPLKGKGPGRLCSSFEDHIKDLRSKASDEQNAANEGKSRKRQAEIKLRELESNLTSVKRHCENVGRSLSSKKLALEEAMHQHAAENSSIPSSSVEELDVEITEFKKKLEEEQILLEALRQRKDEASGKAKDLKVKFDKLRGSAEDKFTAIEKAGSQCRKIESELESAEQGKAHYENLMENKVLPAIKKAEEEYQELTKMREEYAKKASIICPEYEINDCDSLEGCDMKTPDQISAELKELNQKVEHECRRHSEPIADLRMLYEKKQRKIMKRQKVYKALRQKLDACQRALEIRGKKFKSNATRLKQQLSWKFNDHLRKKGISGLIKVNYEEKTLSIEVQMPQDASNRAVRDTRGLSGGERSFSTLCFALALHEMSESPFRAMDEFDVFMDAVSRKISLETLVDFCVAQGSQWLFITPHDTSTVKPGPKVKKMQMLAPRS 1068
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g01340 1068 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 6B 25 1068 IPR027132 GO:0000724|GO:0005524|GO:0006281|GO:0016887|GO:0030915
Aip03g01340 1068 Coils Coil 723 764 - -
Aip03g01340 1068 Coils Coil 217 244 - -
Aip03g01340 1068 Coils Coil 270 297 - -
Aip03g01340 1068 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 30 1051 IPR027417 -
Aip03g01340 1068 Coils Coil 779 806 - -
Aip03g01340 1068 Coils Coil 347 403 - -
Aip03g01340 1068 Coils Coil 815 835 - -
Aip03g01340 1068 Gene3D - 767 1059 IPR027417 -
Aip03g01340 1068 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES 5,6 SMC5, SMC6 25 1068 - -
Aip03g01340 1068 Coils Coil 662 689 - -
Aip03g01340 1068 CDD ABC_SMC6_euk 30 184 - -
Aip03g01340 1068 SUPERFAMILY Tropomyosin 253 451 - -
Aip03g01340 1068 Gene3D - 193 342 - -
Aip03g01340 1068 Coils Coil 432 452 - -
Aip03g01340 1068 Pfam RecF/RecN/SMC N terminal domain 30 1045 IPR003395 -
Aip03g01340 1068 Gene3D - 29 180 IPR027417 -
Aip03g01340 1068 CDD ABC_SMC6_euk 946 1068 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g01340 Aip-Chr3 13715598 13733061 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g01340 27 1068 Structural Maintenance of Chromosomes family AT5G61460 55.566 0.0 1123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g01340 K22804 - gmx:100816916 1351.65