LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aip03g01330	ATGGCCTGGCCACTAGTCTCTGCCTTCCCTAGGAAGATGCTCAAGAACCTTCAAAATCAAGAAACCATGGAGTTTCTTCATCAGTCTTTGCTGACCATTGCTGCTGTCGCCGACGACGCTCAAGAGAACCTCTTCGCCACAACTTCAGCCTTAAGCAATAACATGGTAGAATGGCTTTGTCACTTCCAAGATATCATGTACCTTTTGGACGAGCTTCTCTGCAAGTTCGATTCTGGAAAAGCAATAACAACAACAGTTGCAGATGCTAAACGTGAATTTGAGTTCGTCCTTCGAAGATTTGAAACCATAACAAACCAGAAGCATCTTCTCTTCCTGACCGAGAAACAAGAACAACTATCTTCTTCTCCTTCTCAGAATCTAAGAAGAGATAAAGAGATGAATGAGATGGTTGACCTTTTACTCTCCGATCGAGAAAATACGCCTGTAATTGCTGTGGTTGGAGCGGCATGGACCGGAAGGGACACTCTTGCTAACCTCGTTTACTACCATGGCAGAGTCAAGGCCTGTTTCGAACTTCGAGGTTGGGTTGACTTTCAATGGGATCTTGATTCCGAGAGTTTAGCTAAGATAACTCTTGATAGTTTCAATCAAGATTTTCACTATGATGAAAGTCTACCAGAACTGATTGATAGACTGCACAAGTGCTTACAGGGGAAGAAGGTTCTTCTTGTTTTGAACGGTTTTCGAAATCTTTCTGGCTGGGAAGCCCTTCGGTCATGTTTTTCTGATGCTGCAGGCAATGGAAGTGCGATAATACTCACTACATCAGAGCTGGACGTTGCGTTCGAGATGCTTTCGGATCATGTTTTGTCATTGGAAGATTCCTTGTTTGATCTTCTTGATGAAAAGAATGATCCACAAGGCTTTCCTATTATGTGGACCGGAAAGTCTCTTTATCATCTAGTTCGCCTCGAAATTGTAGGCTCTTGGATATCATATTTGCCAGATGAGATTGGAGAACTAAGATTTCTTGAATACATTGACCTCTCTTTCTCTGAAATTCGAGcattgccggattcaataggcatgctatctcgtttggaaacattgaagttggctttctgctgctatcttcgagagctgccaagtaccatggaagatttggttaacttgcgttatcttgatctaatgggaaccaggctgctagatatgtccttaaagcttgcaagttTCAACAACCTCCAAACCTTGATTGGCTTCACGGTCAACATGAATTCTGGGGAAAATTTGACAGAGTTGGCAACTATATCGGATATCCAAATGCTAAGCATCACAGTTGCTGAATGTGAGCAAGCACTAGAATATTTGGAGCCACCAAAACAGCTAAAAGTGTTAGAGATTTCAGGCTGTCCTGATAGAAGATTTCCATACTGGTTAGGAGACGCCTCGTTTGCGAATTTGAGGGTGATTTGTATTTATGACTGTAAGAATTGTGAGTTCTTGCCACCACTTGGACAGCTTTCGTCTCTTGAAGAGCTATATATTCGAGGGTGTGACAATGTAAGATCAGTAGGCAATGAATTCTATGGACAGTGTTCTTTGCATGTTCCATTTAAGTCCTTGAAGATCCTGTGGTTTGTGGACATGCCTAGTTGGAAAGAATGGATTCTCTTAGATGATGAAAGTCTTCAGTTTCCATGTCTCTGCGAGCTTTACTTGATACAATGCCCGCAGTTGCTGCAAGACTTGCCTAAGTGCCTTCCTTCTCTTAAAAAGCTTGAAATATTTCAATGTGATCGCCTCGTGTCTCCACCACCCAAGATACCTCATCAAGTCCATGAATTGATGGAACAAAAAGAGGAACAAGAACAAGGCTGCACTGAGATTCTTGCAACAAGTGTGACTCAAGTGACTTCAGAATCCTCCTCACACCATGCCACAATTATAATGCCTCCTGTCGCAAATGGTAAGAATGATGAATTAGTTTCAGATGATGATGGAGGCATGGTAGATTTTGAGTCTTCTTTTGAAATTGTGAAGATTGCAGATGCATCAGAGCTGTGCAACTTGACATCCAGAATAAAAAGCCTTAGAATTGAAGGTTGCCAGTTCCTTGAGTCCCTACCAGATGAATTTCTAAAAGATTGTTCAAATATCAGAGAGTTATTTTTTATTGATTGTTACTCTCTCAAGAACTTCTCTGATGTTCTGCACCCCAGTTCCCTGAGAACAATTTATATCCACAAATGCCCAAATTTAGATTTCCTCATTCCTCTCGGAACACACAAGAAATTTGCATTCTTGGAATATCTTTGCATAAGTAGTAGCTGCGAATCGCTCGCCTCCATATCCATAAACCTTTTCCCGAGACTCAGAACTCTTTATATCAAGGATTCTCCCAAACTAGAGTCATTTTCAATAGCCAAGGAACTTCGTGATCGAAATCTGAAACTTGAGTCGTTGGAAATCCGGGACTGTCCTAATCTGATATCCTTTCCAGAAACAGGATTGCCAACTCCTTACCTTAAATCAATATCAATATCTAATTGCAGAAGGTTGAAGTCACTGCCCAATCATTTAGCAAATCTTACATCACTTCAATCATTGCTTATAGACAAATGTCCAGAACTTGAATCTTTTCCTGAAGGGGGCTTGCCATCTAGTTTAAGTTTACTTTCTATCACCTTTTCTGACAAACTTGCACCTCAAAAGGAGTGGAAGTTGGATACACTTCCCTCATTAACTCATTTTGAGATTGAAAGTGGATGCATTGGCATGAAGTCATTTCCAAATAAGGACTTTTTGCCAAGAAATCTCAAGTCTTTACGCTTGAGTAAACTTTCGAGTCTCAGAATCTTGAATGGCACAGGGTTTCAGCATTTGACAGCTCTTGAGACATTGGAGATCAACTGTTGTCATGGGCTATATTCCTTGCCAGAAGGGATGCCATCATCCTTGACTCGTCTTTGCATCAAAGAGTCCCCAATATTGTCCCATAAACTCTTGCATAGAGCGGGCGCGGAGTGGAGCAAGATAGCTCATATTCCCAACCTACAGATTGATGAAGTTAAAAAAGGGGAAATCCCTGAACAAAAACAAAAATTCGGGGAAAAGAGATTTGTGACAAGATCAACATATTTGGAGGGAGGAAAAGGCATCTTAGATGGAGAAAGCCTCAAAAGCCAAAAATTGGATCAAAGAAGGAAAAGGATGCCAATGGTGTCAGATGTATCCTATGAATCAGACTGGAGCAAGATAGCTCATACTTCCAATCTTCAAATTGGTGATGGAATCAAAGAAGGATCAATTGAATTGGAAGCCAGCTTAAAGGGTGAAAGTGTGAACAAAGATGAAAAAAGCTTTACCAGCCAGCAATGGGACCTAAGTTTAGTTACAAAGAAAAGGATGCCACCAACATTAAAAGGTTTCTACGACCTTCAACCTGATGATGAAGTAGTTAAAAAAGGTGGAGGAGGCCGAGGCCGCGACCATGACCCTGGCAGATTAGATGACACTTGGACCTCATCAATGGAAGCAGAAGTTCAAACTGTCCATGGAATCTCAAAGAACCCTTTCAGCCACATAACTAGCAAGGGAAAAGATAGAGATTTGGAGGATTTCACCCTGCAAAAGTTGCTTGAATTGACCGAAAACTTCTCAGAGGACAAAATGATTGGGAGAGGAGGCTTTGGATCAGTATACCATGCTACACTGCAAGATGGTAAGGAAGTTGCAATAAAAAGAGCTGAAATCTCTCCCAACTATGAAGATGAGAAGGAGTATGGCTTTGTGAATGAGCTTCAGATTCACTCAAGACTCCACCACAACAACCTGGTTGGGCTATTAGGATTCTGCCGTGACGCGAATGAGCGCATCTTAGTGTATGAGTACATGAACAATGGCAGCCTCCATGATCATCTCCACAGCCACCAAACTTCTTCTGTTCTAATGTCATGGCCGGCACGGATCAAGGTAGCACTGGATGCAGCAAGGGGGATAGAGTACCTCCACCACTATGCTGTCCCACCAATCATTCATCGCGACATAAAGTCATCCAATATATTATTGGATTCCAAGTGGACAGGCAAATTGTGTGATTTTGGAATCTCATTGAAGGGTCCTGAAGATGAGGACACACATCTTTCAGTTGAAATAGCTGGCACACCAGGCTACTTGGACCCTGAATACTATATAACTCAAAGGCTAACCACAAAGAGTGATGTTTATAGTTTCGGGATTGTTTTGCTAGAGATACTAACTGGATGCAAAGTCATACATAAAGATGATAATGGGGAGCACAGACATTTGGCAAGTTTTGCAGTACCATATATTGATCAAGATGAGATTTTCAAGGTTTTGGATCCAAGAATGCCACCCCCAAAAGCTGCTGAGGAGTATGTGGGGTATTTAGCAGCAGAATGTGCACGCGCAGCACCTCGAGACAGACCAACTATGGCTGAAGTTGTAATTCACTTGGAAAGAGCATTGGCTGCTTGTTTGGCCGTACCAGCAATATGA	4479	0.4032	MAWPLVSAFPRKMLKNLQNQETMEFLHQSLLTIAAVADDAQENLFATTSALSNNMVEWLCHFQDIMYLLDELLCKFDSGKAITTTVADAKREFEFVLRRFETITNQKHLLFLTEKQEQLSSSPSQNLRRDKEMNEMVDLLLSDRENTPVIAVVGAAWTGRDTLANLVYYHGRVKACFELRGWVDFQWDLDSESLAKITLDSFNQDFHYDESLPELIDRLHKCLQGKKVLLVLNGFRNLSGWEALRSCFSDAAGNGSAIILTTSELDVAFEMLSDHVLSLEDSLFDLLDEKNDPQGFPIMWTGKSLYHLVRLEIVGSWISYLPDEIGELRFLEYIDLSFSEIRALPDSIGMLSRLETLKLAFCCYLRELPSTMEDLVNLRYLDLMGTRLLDMSLKLASFNNLQTLIGFTVNMNSGENLTELATISDIQMLSITVAECEQALEYLEPPKQLKVLEISGCPDRRFPYWLGDASFANLRVICIYDCKNCEFLPPLGQLSSLEELYIRGCDNVRSVGNEFYGQCSLHVPFKSLKILWFVDMPSWKEWILLDDESLQFPCLCELYLIQCPQLLQDLPKCLPSLKKLEIFQCDRLVSPPPKIPHQVHELMEQKEEQEQGCTEILATSVTQVTSESSSHHATIIMPPVANGKNDELVSDDDGGMVDFESSFEIVKIADASELCNLTSRIKSLRIEGCQFLESLPDEFLKDCSNIRELFFIDCYSLKNFSDVLHPSSLRTIYIHKCPNLDFLIPLGTHKKFAFLEYLCISSSCESLASISINLFPRLRTLYIKDSPKLESFSIAKELRDRNLKLESLEIRDCPNLISFPETGLPTPYLKSISISNCRRLKSLPNHLANLTSLQSLLIDKCPELESFPEGGLPSSLSLLSITFSDKLAPQKEWKLDTLPSLTHFEIESGCIGMKSFPNKDFLPRNLKSLRLSKLSSLRILNGTGFQHLTALETLEINCCHGLYSLPEGMPSSLTRLCIKESPILSHKLLHRAGAEWSKIAHIPNLQIDEVKKGEIPEQKQKFGEKRFVTRSTYLEGGKGILDGESLKSQKLDQRRKRMPMVSDVSYESDWSKIAHTSNLQIGDGIKEGSIELEASLKGESVNKDEKSFTSQQWDLSLVTKKRMPPTLKGFYDLQPDDEVVKKGGGGRGRDHDPGRLDDTWTSSMEAEVQTVHGISKNPFSHITSKGKDRDLEDFTLQKLLELTENFSEDKMIGRGGFGSVYHATLQDGKEVAIKRAEISPNYEDEKEYGFVNELQIHSRLHHNNLVGLLGFCRDANERILVYEYMNNGSLHDHLHSHQTSSVLMSWPARIKVALDAARGIEYLHHYAVPPIIHRDIKSSNILLDSKWTGKLCDFGISLKGPEDEDTHLSVEIAGTPGYLDPEYYITQRLTTKSDVYSFGIVLLEILTGCKVIHKDDNGEHRHLASFAVPYIDQDEIFKVLDPRMPPPKAAEEYVGYLAAECARAAPRDRPTMAEVVIHLERALAACLAVPAI	1492

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aip03g01330	1492	Gene3D	Transferase(Phosphotransferase) domain 1	1285	1486	-	-
	Aip03g01330	1492	Pfam	NB-ARC domain	130	273	IPR002182	GO:0043531
	Aip03g01330	1492	Gene3D	Ribonuclease Inhibitor	727	887	IPR032675	-
	Aip03g01330	1492	Gene3D	Ribonuclease Inhibitor	408	611	IPR032675	-
	Aip03g01330	1492	PANTHER	SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4	1151	1487	IPR044815	GO:0004674
	Aip03g01330	1492	SUPERFAMILY	L domain-like	675	986	-	-
	Aip03g01330	1492	SUPERFAMILY	L domain-like	303	593	-	-
	Aip03g01330	1492	ProSitePatterns	Protein kinases ATP-binding region signature.	1212	1234	IPR017441	GO:0005524
	Aip03g01330	1492	SUPERFAMILY	Protein kinase-like (PK-like)	1189	1480	IPR011009	-
	Aip03g01330	1492	Gene3D	-	106	274	IPR027417	-
	Aip03g01330	1492	CDD	STKc_IRAK	1212	1481	-	-
	Aip03g01330	1492	Gene3D	Phosphorylase Kinase; domain 1	1168	1284	-	-
	Aip03g01330	1492	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	123	274	IPR027417	-
	Aip03g01330	1492	ProSiteProfiles	Protein kinase domain profile.	1206	1481	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Aip03g01330	1492	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	1331	1343	IPR008271	GO:0004672\|GO:0006468
	Aip03g01330	1492	SMART	serkin_6	1206	1483	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Aip03g01330	1492	Pfam	Protein kinase domain	1207	1478	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Aip03g01330	1492	Gene3D	Ribonuclease Inhibitor	888	1018	IPR032675	-
	Aip03g01330	1492	Gene3D	Ribonuclease Inhibitor	275	406	IPR032675	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aip03g01330	Aip-Chr3	13557220	13562632	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aip03g01330	1147	1490	Receptor kinase-like Gene Family	AT5G47850	51.934	4.02e-102	342

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_CR4L	Aip03g01330		Pkinase	6.2e-50	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aip03g01330	-		-	aip:107629709	2466.03