Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g01279 ATGGGTAGGGGTAAGATTGAAATCAAAAGGATTGAGAATGCTAACAGCAGACAAGTTACATTCTCCAAAAGGAGAACCGGTCTTCTTAAGAAAGCTCAGGAACTCGCTATTCTCTGCGATGCTGAGGTGGCTGTCATCATCTTCTCTAATACAGGGAAGCTTTTTGAGTTTTCCAGTTCTGGAATGAAAAGAACACTTTCAAGATACAACAAATGCACCGATTCTTCAGAGGTGGCTATAGTTGAATGTAAAGCAGAGAAGGAAGATTCTAAGATGGTGGAGGCTCTTAAAGATGAAATTGCAAAGCTAGAAAGAAAGCAACTATGGCTACTGGGTAAGGACATGACAGGATTGAGTATAAAAGAACTGCAACATCTAGAGCAGCAACTTAACCAAGGGTTGTTGGCGGTCAAGGAGAGGAAGGAGGAATTACTTATGGATCAACTGGAGCAGTCTAGGGTTCAGGAACAGAGAGCTATGTTGGAGAATGAAACTTTGAGAAGACAGATTGAGGAGCTTCGTTGTCTTTTCCCGGTAACAGAACGTGTAGTCCCGTCTTATCTTCACTACCCCCATGTGGAAAGAAAGAATGTTTATGTAGATAATGGTGTTGTTAAGTGTACCAGCTTGGCAAGTAACTGTGAAAACGAGAGAGGAGATTCGGACACCGCATTGCATTTAGGGTTGCCAAGTGATGTTAATCACAAGAGGAAGGCAACCGAGAGAGAAACATTTTCGAATGAGTCAGAAAGCCAAGTTGCTCTACTCTGA 771 0.4241 MGRGKIEIKRIENANSRQVTFSKRRTGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSSSGMKRTLSRYNKCTDSSEVAIVECKAEKEDSKMVEALKDEIAKLERKQLWLLGKDMTGLSIKELQHLEQQLNQGLLAVKERKEELLMDQLEQSRVQEQRAMLENETLRRQIEELRCLFPVTERVVPSYLHYPHVERKNVYVDNGVVKCTSLASNCENERGDSDTALHLGLPSDVNHKRKATERETFSNESESQVALL 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g01279 256 Coils Coil 149 176 - -
Aip03g01279 256 Pfam K-box region 89 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Aip03g01279 256 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Aip03g01279 256 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Aip03g01279 256 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Aip03g01279 256 Gene3D - 13 82 IPR036879 GO:0003677|GO:0046983
Aip03g01279 256 Coils Coil 123 143 - -
Aip03g01279 256 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Aip03g01279 256 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Aip03g01279 256 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL15 1 234 - -
Aip03g01279 256 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Aip03g01279 256 Coils Coil 86 106 - -
Aip03g01279 256 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Aip03g01279 256 PANTHER MADS BOX PROTEIN 1 234 - -
Aip03g01279 256 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Aip03g01279 256 SUPERFAMILY SRF-like 2 76 IPR036879 GO:0003677|GO:0046983
Aip03g01279 256 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Aip03g01279 256 MobiDBLite consensus disorder prediction 237 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g01279 Aip-Chr3 12831508 12834823 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g01279 1 251 MADS-box Gene Family AT5G13790 55.731 6.46e-86 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Aip03g01279 K-box 1.8e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g01279 - - zju:107417456 369.777