Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g01259 ATGGAGCAATTCACAAGCCAACCTCTTTCGTCTTCGAGCAAGAAGGATGAAAGAAGGCTCATAGAGAGCAATAGAAGGAACCTGATAAAGAACCTCTACTCCAAACTCAACTCTCTTCAACCTAATTCTAACACCAAGAAAGCGTTGCCGGATCAACTGGATGAAGCCATCAACTACATAAAGAGCTTAGAGGAGAAGGTGTTCCTTCACCGATTCAATGGCGGCTTCTACTTCTCTTGA 240 0.4375 MEQFTSQPLSSSSKKDERRLIESNRRNLIKNLYSKLNSLQPNSNTKKALPDQLDEAINYIKSLEEKVFLHRFNGGFYFS 79
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g01259 79 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 11 67 IPR036638 GO:0046983
Aip03g01259 79 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 9 67 IPR015660 GO:0003700|GO:0006357
Aip03g01259 79 MobiDBLite consensus disorder prediction 1 20 - -
Aip03g01259 79 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 9 67 - -
Aip03g01259 79 Pfam Helix-loop-helix DNA-binding domain 15 64 IPR011598 GO:0046983
Aip03g01259 79 Gene3D - 6 72 IPR036638 GO:0046983
Aip03g01259 79 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 13 63 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g01259 Aip-Chr3 12519534 12519870 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g01259 10 67 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 46.667 1.59e-10 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g01259 - - ahf:112737308 131.724