Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g01257 ATGGGAACACAACCCGAACAACCATGTCCTGAGGAAGATGACGAGGAGATGCTGGGTCATGGAGCAACAATTTCGAGTCAGTCAATGTCAACAAGCAGGAGTGTGGGGTCACCGTCCAGCCGGAGTGAGCAGACAATGGCAACACCTGCTAGTGATAGCACTTTTCTCAGATTAAACCATCTTGACATTCATGGTGACGATGCTGGATCGCAGGGAGCAGTTGCTAGCAAGAAGAAAAAGAGAGGTCAACGGGCTGCATTATTGTTGGGAGGTCATGATGCCACTTTTCTTACTCTATTTCTCATTTATTGTTGGCTGTCTCCAGTTTGTGAGAAGGTGGAGAGCAAGGGACGCACAACATACAACGAGGTAGCAGATGAGCTTGTTGCTGAATTTGCTGACCCAAGCAACAGTGTTTTAGCCCCTGATCAGCAACAATATGATGAGAAAAATATTCGTCGAAGGGTCTATGATGCTTTGAATGTTCTCATGGCAATGGATATCATTTCTAAGGATAAAAAGGAAATACAATGGAAGGGTCTTCCTCGTACTAGCCAGAGTGATATTGAAGAACTAAAGACAGAACGTCTTGGGATTAGGAATAGAATCGAAAAGAAAGCAGCTTACTTGCAAGAGCTGGAAGAGCAATATGTAGGTCTTCAGAACCTCATAAAACGGAATGAGCAAGTATGTAGCTCAGGAAATGCTCCCAGTGGAGGTGTATCTTTGCCCTTTATTCTAGTGCAGACACGTCCGCATGCAACTGTTGAAGTGGAAATATCAGAAGATATGCAGCTTGTTCATTTTGATTTCAATAGTACTCCTTTTGAGCTGCATGATGACAACTATGTTCTCAAGGCAATGAAATTTTCTGAAAGGCCTCAGAACGATAATAATGTAACGCCAAATGTTACAGATGGCGGTGAAGGTTCTAGCATGTCAGGGTTGTTTCATGTGCAGGCTCCTACCACAGTTTCAAACCCACCCGTGAGGCCTCCATCATCACCACCACTTCCTGGAATATTGAAG 1029 0.4422 MGTQPEQPCPEEDDEEMLGHGATISSQSMSTSRSVGSPSSRSEQTMATPASDSTFLRLNHLDIHGDDAGSQGAVASKKKKRGQRAALLLGGHDATFLTLFLIYCWLSPVCEKVESKGRTTYNEVADELVAEFADPSNSVLAPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSQSDIEELKTERLGIRNRIEKKAAYLQELEEQYVGLQNLIKRNEQVCSSGNAPSGGVSLPFILVQTRPHATVEVEISEDMQLVHFDFNSTPFELHDDNYVLKAMKFSERPQNDNNVTPNVTDGGEGSSMSGLFHVQAPTTVSNPPVRPPSSPPLPGILK 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g01257 343 PIRSF Txn_factor_DP 6 338 IPR015648 GO:0005667|GO:0051726
Aip03g01257 343 MobiDBLite consensus disorder prediction 21 53 - -
Aip03g01257 343 CDD DP_DD 185 288 IPR014889 -
Aip03g01257 343 PANTHER TRANSCRIPTION FACTOR DP 22 343 IPR015648 GO:0005667|GO:0051726
Aip03g01257 343 SUPERFAMILY E2F-DP heterodimerization region 187 304 IPR037241 -
Aip03g01257 343 MobiDBLite consensus disorder prediction 293 343 - -
Aip03g01257 343 SMART DP_2 187 343 IPR014889 -
Aip03g01257 343 SMART E2F_TDP_2 66 180 IPR003316 GO:0005667|GO:0006355
Aip03g01257 343 Pfam E2F/DP family winged-helix DNA-binding domain 109 180 IPR003316 GO:0005667|GO:0006355
Aip03g01257 343 Coils Coil 203 230 - -
Aip03g01257 343 MobiDBLite consensus disorder prediction 1 53 - -
Aip03g01257 343 MobiDBLite consensus disorder prediction 293 325 - -
Aip03g01257 343 Pfam Transcription factor DP 188 300 IPR014889 -
Aip03g01257 343 SUPERFAMILY "Winged helix" DNA-binding domain 109 181 IPR036390 -
Aip03g01257 343 MobiDBLite consensus disorder prediction 326 343 - -
Aip03g01257 343 Gene3D Transcription factor DP 186 307 IPR038168 -
Aip03g01257 343 Gene3D - 104 185 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g01257 Aip-Chr3 12503419 12506329 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g01257 109 296 E2F-DP Transcription Factor Family AT5G02470 54.497 2.08e-73 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Aip03g01257 DP 6.3e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g01257 K04683 - gmx:100797603 474.552