Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g01244 ATGGACTCAGGTTCACCATACCAATGGATAAGGGAGCTGAGATTGGAAGACAGCAACACCTTAAATCCATTTGATCTTCTTTACGAATGTGCCAAATTTGTTGCATCAGGAAGCATAAAAAATGCAGACATAGCACTTGAATACATCTCTCACCAGTTGTCTCCGGACGGCGCAGCAGCGCAGCGAACGGTGACTTATTTCAGCGAAGCTCTGGCTTCCAAGATAGTCAAGAATCTTCCAGGAGTAGACAAAGCTCTAAACTCCTCAAAGAGATTAACTGCTCCTGAAGAAATCCTTGTCCAGAACTACTTCTATGAGTTGTTTCCATTTCTGAAATGTGCTTACTTGACTGCAAATCAAGTCATAGTTAAAGCGATGGAAGGCGAAAAAATTGTTCATATAATTGATCTGCATTGTGCAGAGCCGGTTCAATGGATTAACCTCTTGATGACATTGAATGAGCGTCCTGAAGGACCTCCTCATTTGAGAATCACAAGCATTCATGATAAGAAAGAGGTTTTAGATCAGATGAATGCTAGTTTGACAAGAGAAGCAGAGAAATTGGATTTTCCTTTGCAGTTCAATCCTATAGTTAGCACTTTAGAAGATCTTGACATTGATAGTTTGCCGGTTCGCACAGGCGAGGCGCTTGCAATTTGTTCTGTCTTGCAGCTGCATCGCCTTCTAGCCACAGATGATGAACTTCTAGGGAGGAATTCCCCGGCTGCAACGATTAATCTGCATAGAGCAGTGCATATGAACCGAAGAACTTTCGCAGAGTGGCTCGAAAGAGATATGATGAATTCATATATTTCAAGTCCTAACTCTGCTTTGTCACCTCCTCCTCTGTATCCTTCACCTAAGATGGAGGCATTTTTAAGAGATCTTCGCAAACTGCAGCCGAAATTAATGGTGATAACTGAGCAAGAGACTAATCTTAATGGATGCAGTCTTGTGGAGAGAGTTGAGAAAGCTTTGTACTTCTACAGTGCTTTGTTTGATTGCTTGGATTCGACCGTGCGAAGAACTTCCTTGGAGAGGAAGAAAGTTGAGAGTTTGCTGCTTGGAGAGCAGATAAAGAACATCATTGCATCTGAGGGGTTTGAGAGAAAGGAGAGGTATGAGAAGCTTGAGAATTGGATTCGGCGGCTCGATCTGGCCGGTTTTGTGAGGCTGCCTTTGAGAGACAATGATAAGTTGCATGCTAAGGAGGTTTTGCACAACTATGGACACAAATATATGATTAGAGAAGGCCATGGTTGCTTGCTTGTTTGTTGGGGTGATAGACCCCTTTTCTCCATTTCAGCATGGAGTTTTAGAGGATTAAATCTTTCTTTATAA 1341 0.4243 MDSGSPYQWIRELRLEDSNTLNPFDLLYECAKFVASGSIKNADIALEYISHQLSPDGAAAQRTVTYFSEALASKIVKNLPGVDKALNSSKRLTAPEEILVQNYFYELFPFLKCAYLTANQVIVKAMEGEKIVHIIDLHCAEPVQWINLLMTLNERPEGPPHLRITSIHDKKEVLDQMNASLTREAEKLDFPLQFNPIVSTLEDLDIDSLPVRTGEALAICSVLQLHRLLATDDELLGRNSPAATINLHRAVHMNRRTFAEWLERDMMNSYISSPNSALSPPPLYPSPKMEAFLRDLRKLQPKLMVITEQETNLNGCSLVERVEKALYFYSALFDCLDSTVRRTSLERKKVESLLLGEQIKNIIASEGFERKERYEKLENWIRRLDLAGFVRLPLRDNDKLHAKEVLHNYGHKYMIREGHGCLLVCWGDRPLFSISAWSFRGLNLSL 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g01244 446 ProSiteProfiles GRAS family profile. 14 438 IPR005202 -
Aip03g01244 446 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 4 440 IPR005202 -
Aip03g01244 446 Pfam GRAS domain family 25 437 IPR005202 -
Aip03g01244 446 PANTHER TRANSCRIPTION FACTOR GRAS, SCARECROW-LIKE PROTEIN 3-RELATED 4 440 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g01244 Aip-Chr3 12328198 12329809 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g01244 1 440 GRAS Transcription Factor Family AT1G50420 49.778 3.37e-148 429
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Aip03g01244 GRAS 7.1e-111 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g01244 - - gmx:100779726 588.956