Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g01242 ATGATTATTGCATTGTTAGGTTCAGCACATGGATATCCCTGGTTCAAAGGGATAAGTAGCGAGCCAAGGGGCATGCTCCTCTACACTCTTGTGCGCAATTGTGCTAAATACATTGAATGTGGCAACATCTCAGATGCAGATTCAGGATTAGCAAAAATTTCTCACCTTGCTTCCTCAGAAGGTGATCCATTTCAAAGGCTAGCAACTTATTTCAGTGAGGCACTTACCTGCCAACTTGTGAATAGATCATACCTCCATGGTGCCCATCACATTCTATCAAAACCACTCTCAACTTTTGAAGACTCTTTTGTTAAGGGTTTATTCTTTGAACTCTATCCATTCCAAAGGGTATCTTATGCGGTTACAAATCAGGCCATTATTGAAGCCATGACAGGGCTTCAAGGTATTCATATACTTGATCTTAGTGCACCCCATGATGCTACCCAATGGGTCCTCTTTATGCAGAGTTTGAAAGAGCGTTGTAGTTCTTCTTCTTCATCATCAACTAGACCACAACAACGACCATATTTGAAGATCACTTGTGTGCATACAAATCAGGAGGTGTTAGCCCAAATCAAGTTGCGGTTGACATTGGAGGCCGACAAGTTTATCCAATTAGTGAGTACTTTAGAAAATTTAAACCTAGATGATTTGCCTATACTTAACGGAGAGCCCGTTGCGATCAGTATTGTTCTTCAATTGCACCGCCTTTTAAGCACGGATGATCCACCTGTTCCAGCTGTAGTATCCAACCAATTCTTCCATCAACAAAATTTTGCAGATGTGATTGCCAAAGACAGTTATAATAATAACAATCACAATGTCATAATTAATCAAAGTCCTAATTCGGCATTGGCACTAGCAACTCATCATCGTTTAACTCAAAGCCCAGTGCCTAAGATGGAGTGTTTTCTGCACGGCCTCTGGAAGCTCCAGCCCAAAGTCATGGTCATCATGGAACAAGAATCAAACGTCAACGGACAATCCTTAACGGATCGGGTTGACAAAGCCTTGTATTTCTACGCTGCGTTGTTTGATTGCTTGGTAACGGCGCCGTCAGTGAAGAAGATCTTGGTTGAGAGAGCGATGTTGGGAGAGCAAATAAAGAATATAATTGCGTGTGAGGGAGCTGAGAGAAAAGAAAGGTATGAGTCGCTTAAGGCATGGATCTCAAGGCTTGAACTTGCTGGGTTTTGCGGTGAAGCTATTAGCTTGGAGGGGATGTTAAGAGGAAAATCGCCCTCAGAGGAGAGAAACGAGGTCACGATAGTATCAGAGCAGAGGCATCATAAGGGAGAAAGACACAATGTGCGATCGAACAAGAGGCTAAAGAGACTTTCAAAGCGGATTAGAGTTCATCGACAAAGACGATATCCTAGTTCTTTAAATCGGGGGAGGCACAGCGATGGCCTTGCGTGGCAATACCTATGTGACAGCAACCATGACTTTAGGGATGGTCAAGGGCACGAAGCGTGA 1476 0.4329 MIIALLGSAHGYPWFKGISSEPRGMLLYTLVRNCAKYIECGNISDADSGLAKISHLASSEGDPFQRLATYFSEALTCQLVNRSYLHGAHHILSKPLSTFEDSFVKGLFFELYPFQRVSYAVTNQAIIEAMTGLQGIHILDLSAPHDATQWVLFMQSLKERCSSSSSSSTRPQQRPYLKITCVHTNQEVLAQIKLRLTLEADKFIQLVSTLENLNLDDLPILNGEPVAISIVLQLHRLLSTDDPPVPAVVSNQFFHQQNFADVIAKDSYNNNNHNVIINQSPNSALALATHHRLTQSPVPKMECFLHGLWKLQPKVMVIMEQESNVNGQSLTDRVDKALYFYAALFDCLVTAPSVKKILVERAMLGEQIKNIIACEGAERKERYESLKAWISRLELAGFCGEAISLEGMLRGKSPSEERNEVTIVSEQRHHKGERHNVRSNKRLKRLSKRIRVHRQRRYPSSLNRGRHSDGLAWQYLCDSNHDFRDGQGHEA 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g01242 491 ProSiteProfiles GRAS family profile. 18 449 IPR005202 -
Aip03g01242 491 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 10 412 IPR005202 -
Aip03g01242 491 Pfam GRAS domain family 30 408 IPR005202 -
Aip03g01242 491 PANTHER SCARECROW-LIKE PROTEIN 3 10 412 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g01242 Aip-Chr3 12301503 12304594 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g01242 5 412 GRAS Transcription Factor Family AT1G50420 36.490 1.06e-80 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Aip03g01242 GRAS 3e-70 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g01242 - - aip:107632524 796.193