LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aip03g01239	ATGGCTAACAATGTCACTAGCCGGTTCCATCAATCTCTCACTCGAAATGCTCTTCGCTCTTATCTCGCCGAGTTCATGTCCACTTTCTTCTTTGTTCTTGCCGTTGTTGGTTCTGGAATGTCCGCACGGAAATTGATGCCTGATGCAACACTGAATCCGGCTACCCTTGTTGTGGTTGCCATTGCAAACGCTTTCGCCTTGTCGTCAGTGTTGTACACCGCATGGGACATCTCCGGTGGACACGCCAACCCGGCGATTACGTTTGCAATGGCAATAGGAGGCCATGTTAGTGTACCAACCGCTCTCTTTTATTGGGTTGCCCAACTTATAGCCTCTGTTATGGCTTGCCTTGTCCTTAGGGTCATCCTTGTTGGAATGCATGTTCCGACATACACAATTGCTGAAGAAATGACAGGGTTTGGAGCATCGGTACTAGAAGGTTTCTTGACATTTGTATTGGTGTACACAGTTTATGCAGCAAGGGACCCAAGGCGTGGTCCATTGAGTGCTACAGGACCACTTGTAATTGGATTTATAGCCGGTGCAAATGTGTTAGCCGCAGGTCCCTTCTCTGGAGGCTCAATGAACCCAGCATGTGCTTTCGGCTCTGCCGCCATTGGTGGCAGTTTCAGGAACCAAGCAGTGTATTGGGTTGGTCCCTTGCTTGGTGCTGCCGTCGCTGGCCTTCTCTATGACAATGTAGTGTTCCCAGTAACCGCAACAACTGGAGTTTCTGATGGACTTACTGTGTGA	753	0.494	MANNVTSRFHQSLTRNALRSYLAEFMSTFFFVLAVVGSGMSARKLMPDATLNPATLVVVAIANAFALSSVLYTAWDISGGHANPAITFAMAIGGHVSVPTALFYWVAQLIASVMACLVLRVILVGMHVPTYTIAEEMTGFGASVLEGFLTFVLVYTVYAARDPRRGPLSATGPLVIGFIAGANVLAAGPFSGGSMNPACAFGSAAIGGSFRNQAVYWVGPLLGAAVAGLLYDNVVFPVTATTGVSDGLTV	250

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aip03g01239	250	Pfam	Major intrinsic protein	16	231	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Aip03g01239	250	ProSitePatterns	MIP family signature.	81	89	IPR022357	-
	Aip03g01239	250	PANTHER	AQUAPORIN TIP5-1-RELATED	3	242	-	-
	Aip03g01239	250	SUPERFAMILY	Aquaporin-like	10	238	IPR023271	-
	Aip03g01239	250	PRINTS	Major intrinsic protein family signature	19	38	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Aip03g01239	250	PRINTS	Major intrinsic protein family signature	63	87	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Aip03g01239	250	PRINTS	Major intrinsic protein family signature	100	119	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Aip03g01239	250	PRINTS	Major intrinsic protein family signature	145	163	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Aip03g01239	250	PRINTS	Major intrinsic protein family signature	177	199	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Aip03g01239	250	PRINTS	Major intrinsic protein family signature	214	234	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Aip03g01239	250	PANTHER	AQUAPORIN-8	3	242	IPR034294	-
	Aip03g01239	250	Gene3D	Glycerol uptake facilitator protein.	3	243	IPR023271	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aip03g01239	Aip-Chr3	12291606	12293471	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aip03g01239	6	247	Major Intrinsic Protein MIP	AT3G47440	67.355	3.83e-115	328

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aip03g01239	K09873		-	gmx:100801448	392.889

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Aip03g01239	03	12291606	12293471	Aip03g01239	03	12291606	12293471	ECH