Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g01216 ATGATCCAGAACGCTGATATGGAACTTGAATCAGGGACTTGTAATATTTGCTCAGCTCCTTGTTCATCTTGCATGCATCTTAATCGAGCTCTAACTGGAACAAAGGCTGAAGAATGCTCTGATGAAAATTGTCGATCAGGGGAACCCAGTCAGTTTTCTATGGATGTGAGTGATCTATCTTCTCATAGGAGTACAGCTTGTGAAAGATTGAAGCATGCTGTCAGTGAAACCAGTAACTTGCTTCGTGTTAATTCTGGTCATGAATCTCTGTCTGAAAATGCTAAAACCACACAAACTTTATCAGAGAAGTATCACGATGCCAAGTGTTTAGAAGGACCTGATGACAGCTCTTCGTGTATCAGTAGAAACAGTAATGCTAATTTAGTTAGTGATAGCCATCAAAGAGATGCAGACAAAACAAATATTTCATGTAGTTCATCCTCAGTTAGTCACTTAGGAGCAGAAGGATCTACAAGTGGGCCATCTGTTTATATATCAGGCTTGTGTGAGATACCCTCTTCTAAAGATGCAGATATGCCAGAGAATTCATCAGAATGCTGTGTTGGAAATGTTGAGTCATCGCCAACCAAGGAGATAATCACTGCTAATTTTTCAGGTGAAAAATTTCTTGCAAATAACAAAGGCCTTGTTAATGGCACTACTAGCAAGTTTTCGGCAAAAGTATATCCAAAGTCAGAAGCAGATAGTGACAATGGTGTTGGTGATGTGAAAGACGAAGATCGTAAAGTTCCAGCCCATGATGGACTGCACGAGAAGCAGGGGGAGCTTGTTAAATCACCCGTCAAGCCCGAAGCTCAATCTGGAGATGAGAGCGATGACTCAGATGTTGAGCATGATGTAAAGGTATGTGACATCTGTGGAGATGCTGGTCGCGAGGAGCTACTTGCAATATGTAGTAGATGCAGTGATGGTGCAGAGCACACCTATTGCATGCGAGAAATGCTCGAAAAGGTCCCAGAAGGTGACTGGTTATGTGAAGAATGCAAGTATGCTGAGGAGACTGAAAAACATCGGCTGGATGTTGAAGAGAAAAAGGTCCATAAAGTTTGTTCAACTGCGCAAATATCTGGTAAAAGGCCTTCTGAGGGTGAAGAATGGGCAAAGGCAGGGAAAAGGCAAGCTCTTGAATCAAGTAAAGGGTCACCAAAGGGGTCAAGCCCCAAGAAAATATTTCCACTGTCGCGAGAGTCTTCGTTCAAGAGCATTGATAAAGGAAAGTTGAACTCTGATCATCAGACCTCCATTTGTAACCACTCCAATGGCAATGACATAGAACTTGCTCGTTCTCTATCTGCTGGTCCTCGGAGTCAAACAGCTAAGAGTACATTGTTAAAGTCAAATTCATTCAACAACATCAATTCCAAGCCCAGAGTCAAACTTGTTGATGATGTCCCGCAAAAGAAGAAAGGGGCTGGTGAACATACCTCTAAGAATATTGAGATGCCAGGACGAATGATAAGCAAATCTAGTTCATTGAAATCCTCAAATTTGGGTCATTCATGTGCCACTGAATCAAAAGTCAAAATGGTTACTTCCAAACCTGGAACTACTGCGGATCAAAAAGGATCAAAACTAGCAAAAGAATCAGGTGCCTCTCATAGGAAATTTTTCTCTAGGGTTGATCGGCCTGTTGTTTGTTCAACCATGGCTAGTTCTGCTGTTCTGACATCTAAGAGTGATCAGAAGCTTACCCCTCGTAGCGAAACTGCTAAACCTTCAACAATTAACAACAATCACGAATTTAAGGTCAACCAAGATGGGAGATCAAATTCATTATTGAAGTCTAAGAATAATACAAGCCGTAAGTGTTTGGACCCTCTAGTTAGTTCAGTTAGAACATCAACCAGTGGTGATGAAACTCAATTAGATGGGCTGCCTCAATCAAGAGAGATAACAAATCAGGTTGATAAAACCAAAGGTAGTTCTGGTGATTGTGTGAGGTCTGGTCTTACTAATGCTTCTGAAAGCCCATTCTGTCACAAATGTAAGGATTTAGGCCATGCTACAGAATGTTGCATGGTTGATAAACAGGAATTTGGCCTGGAAGGATCAGCCACTGTCCCAAACAGTTCAAAAGACAAAACACATAAAGATAATAGACTGAAAGCTGCAATCCAGGCAGCTTTACTTAGAAGGCCCAAAATATGCAAGAGGAAAGAAGTGCCTGACCAAACTGAGAAGTTTCTTACATCAGCCATAGACATGAGGTCCGAAGTCACTTCTCAAGATAAGGCGTTTGTTATTGACACTCCAAAGAATATTGTTTCTACTGAAGAAACAAAAGTGAGGCAGGATATCCTTCAGAATCCTACATTTGAAACTTCGTCTTCCAATGATTCGAAGCAACATAGCTTTTGTCCAGCTGATTTTGGATCACAACCTAGAAAGTTAGAATCTGTTGGTCCTACTCCTGGAAATCCTGTAGTTAGAGACTTTTGCAATCAAGCTTTGGCTGTCTCAAGTGTTCTTCCAAAGACATCAGTCTTTCCAGAATATGAATACATTTGGCAAGGTGTCTTTCGAATGCATAGAAGTGGAAAGCCGCCTGACTTATGTACTGGTATTCAAGCGCATTTATCCACATGTGCTTCCCCTAAAGTTCTTGAGGTAGTGAACAAGATTCTTCCTGAGGTTTCCCTCAATGAAGTTTCTCGCTTGAGCACGTGGCCTACACAATTTCATCAAGGCGGGGCAAAGGAAGATAATATTGCACTTTACTTTTTTGCCAAAGACATTGAAAGGCAAGGATATGAATATCATTTTTTTATTGACAGAAAGCTGCCAAATAAAAAATTGAAAACACGTTTCTCTGATTTTCTTTACGAGAGACACTACAAGGGTCTACTGGATCACATGATTAGAAATGATTTAGCGCTTAAAGGAATTTTTGATGGTGTTGAACTTCTTATATTCCCCTCCAATCAGCTTCCTGAAAATTCTCAGCGTTGGAATATGTTGTTTTACTTATGGGGTGTATTTAGAGGGCAGAGGAGGAATCATTCTGATTCTGCAAAAAAGATTTGTAGTCCCAGTTTGAATGCGTTGTCAGTTCAGAAGGGTTCTCTGACTGCTGTGATGACTGTGTCTGAAACCCACTGTTCACCAATGCGGATGGATGAACAACCAATTGCTTGTGGTAAAACCTGCAGTGAAGTTCTCTCATCCACTTCCATGGACCAAGGCGATACTGTTTTAAGTGGGGATTTTGATATTAAAGAAACTATTTTTGACCAGGCACGTTTGGGTCCACAAGTAAACTTACAGAGGCAAGATAGTAGAATCAACACGGAATCTGCATCAAAGAATCCGACAAGCAGTGAACAATTGTGCCAACAAATGCACTCTCCAGGTTCACCTCCGAAGCACAGAATCCCCACACCTCCTGAAGCAATGGGAACGCATGTAAGTAGCAGGATTTTGGAAACAAAAATTGATTGTGATATTTCAGTCAAGAAGGAGAACTCTCTGTCTTCTGGGATTCCTTCTGCTGGCAAACAAGAGATAGATGCTGCAAGCAATACCTCAAAGAATCAAATTTCAGAAAGAACTAACAATGATGAAGATCAGCGAAGGCCTAAAAGGAAACTGATAGAAGAGGATCTCAATGTTAACATGGAGGCAACCTTTCAAGATGATCCGACTATAAGAGGCACCAATTGTGAGCAAACCATTGATAAAAGAGTTGAGCATATAGATGTTTCAGATGCAGTTTTGAAGGCTTCCGCAGATAGTTATCAGAAATTGGAAGATGGAGAAACTTCCAGCAAGAAGCTCAAGTCAGGTTTCGGTGAAATTTATGCAAGTTGCAGTTCAGGTGGTAGGGAATCTTTCAATGGCAGTTTTACAGCCCTTGCAAACCATCCCGGTACCTTCTCTTCAGTTGAGGGTAGAGGATGCAACGAAGCTTGCTTAGATGAAGTCATTCATGAGGACCTTGGAACTATGGAAAGAACCTTCTTTCCTGTCGGTTTGCATCAGAAAAATGACTCTCGCTTGATGCTTAATGGCATGCCAGTGGAGGGGCCTTGTGATTACGAGGGTCACTTTCAAGTTGGGATTCCAAACCTAGAGCTTGCTTTGGGGGGCGAAACAAAACCACAACCACCGCCAGCACCGCCACTACCACCACGTAAGGGTATGTTCCCTTTTCTTGTCAGGGATGGAGACAAGAAAAATAACCAGGACTGTCTCTATCATTCCCATCATCAAATAAGGAACCTGTCAAACCAACTCCAAAAGCTGAACATTCGCCTGATGGGCATCATGTGA 4290 0.417 MIQNADMELESGTCNICSAPCSSCMHLNRALTGTKAEECSDENCRSGEPSQFSMDVSDLSSHRSTACERLKHAVSETSNLLRVNSGHESLSENAKTTQTLSEKYHDAKCLEGPDDSSSCISRNSNANLVSDSHQRDADKTNISCSSSSVSHLGAEGSTSGPSVYISGLCEIPSSKDADMPENSSECCVGNVESSPTKEIITANFSGEKFLANNKGLVNGTTSKFSAKVYPKSEADSDNGVGDVKDEDRKVPAHDGLHEKQGELVKSPVKPEAQSGDESDDSDVEHDVKVCDICGDAGREELLAICSRCSDGAEHTYCMREMLEKVPEGDWLCEECKYAEETEKHRLDVEEKKVHKVCSTAQISGKRPSEGEEWAKAGKRQALESSKGSPKGSSPKKIFPLSRESSFKSIDKGKLNSDHQTSICNHSNGNDIELARSLSAGPRSQTAKSTLLKSNSFNNINSKPRVKLVDDVPQKKKGAGEHTSKNIEMPGRMISKSSSLKSSNLGHSCATESKVKMVTSKPGTTADQKGSKLAKESGASHRKFFSRVDRPVVCSTMASSAVLTSKSDQKLTPRSETAKPSTINNNHEFKVNQDGRSNSLLKSKNNTSRKCLDPLVSSVRTSTSGDETQLDGLPQSREITNQVDKTKGSSGDCVRSGLTNASESPFCHKCKDLGHATECCMVDKQEFGLEGSATVPNSSKDKTHKDNRLKAAIQAALLRRPKICKRKEVPDQTEKFLTSAIDMRSEVTSQDKAFVIDTPKNIVSTEETKVRQDILQNPTFETSSSNDSKQHSFCPADFGSQPRKLESVGPTPGNPVVRDFCNQALAVSSVLPKTSVFPEYEYIWQGVFRMHRSGKPPDLCTGIQAHLSTCASPKVLEVVNKILPEVSLNEVSRLSTWPTQFHQGGAKEDNIALYFFAKDIERQGYEYHFFIDRKLPNKKLKTRFSDFLYERHYKGLLDHMIRNDLALKGIFDGVELLIFPSNQLPENSQRWNMLFYLWGVFRGQRRNHSDSAKKICSPSLNALSVQKGSLTAVMTVSETHCSPMRMDEQPIACGKTCSEVLSSTSMDQGDTVLSGDFDIKETIFDQARLGPQVNLQRQDSRINTESASKNPTSSEQLCQQMHSPGSPPKHRIPTPPEAMGTHVSSRILETKIDCDISVKKENSLSSGIPSAGKQEIDAASNTSKNQISERTNNDEDQRRPKRKLIEEDLNVNMEATFQDDPTIRGTNCEQTIDKRVEHIDVSDAVLKASADSYQKLEDGETSSKKLKSGFGEIYASCSSGGRESFNGSFTALANHPGTFSSVEGRGCNEACLDEVIHEDLGTMERTFFPVGLHQKNDSRLMLNGMPVEGPCDYEGHFQVGIPNLELALGGETKPQPPPAPPLPPRKGMFPFLVRDGDKKNNQDCLYHSHHQIRNLSNQLQKLNIRLMGIM 1429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g01216 1429 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 237 360 IPR013083 -
Aip03g01216 1429 MobiDBLite consensus disorder prediction 360 427 - -
Aip03g01216 1429 MobiDBLite consensus disorder prediction 237 265 - -
Aip03g01216 1429 PANTHER - 948 1207 - -
Aip03g01216 1429 PANTHER - 1209 1402 - -
Aip03g01216 1429 MobiDBLite consensus disorder prediction 561 605 - -
Aip03g01216 1429 MobiDBLite consensus disorder prediction 1097 1122 - -
Aip03g01216 1429 MobiDBLite consensus disorder prediction 1161 1187 - -
Aip03g01216 1429 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 948 1207 - -
Aip03g01216 1429 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 1209 1402 - -
Aip03g01216 1429 PANTHER - 7 936 - -
Aip03g01216 1429 MobiDBLite consensus disorder prediction 139 160 - -
Aip03g01216 1429 MobiDBLite consensus disorder prediction 775 809 - -
Aip03g01216 1429 SUPERFAMILY FYVE/PHD zinc finger 277 341 IPR011011 -
Aip03g01216 1429 MobiDBLite consensus disorder prediction 1161 1200 - -
Aip03g01216 1429 MobiDBLite consensus disorder prediction 775 794 - -
Aip03g01216 1429 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 7 936 - -
Aip03g01216 1429 MobiDBLite consensus disorder prediction 1097 1139 - -
Aip03g01216 1429 SMART PHD_3 289 336 IPR001965 -
Aip03g01216 1429 ProSiteProfiles Zinc finger PHD-type profile. 287 338 IPR019787 -
Aip03g01216 1429 MobiDBLite consensus disorder prediction 516 530 - -
Aip03g01216 1429 MobiDBLite consensus disorder prediction 129 160 - -
Aip03g01216 1429 MobiDBLite consensus disorder prediction 516 540 - -
Aip03g01216 1429 MobiDBLite consensus disorder prediction 231 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g01216 Aip-Chr3 12046885 12052520 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g01216 - - adu:107477384 2092.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g01216 03 12046885 12052520 Aip05g01264 05 18442756 18451537 ECH
Aip03g01216 03 12046885 12052520 Aip03g01216 03 12046885 12052520 ECH