Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g01209 ATGGCTGCCGCTGACAACACCACCAAGCCAAGGGATTATTACAAAGTGTTGGAGGTTGATTATGATGCAACTGATGAAAACATCAAATTAAATTACCGAAGACTTGCATTGAAATGGCATCCTGACAAGCATAAAGGTGACAGTACAGTTACTGCAAAATTTCAAGAGATAAATGAAGCTTACAATGTGTTGAGTGATCCTGCCAAGCGTTGTGACTATGATTTAACCGGAGCCTGTGAGATCGAAAAATATAGCTTGCAGGAATACCTTGCCAGATTTAAAGGAATGATTCTTACCTGCAATGGACTTGGCATCAACCATACAGACAGATGGTCGCCACATTTGATTGAAAGTATTGATTCCTTAGATGAGTAA 375 0.3973 MAAADNTTKPRDYYKVLEVDYDATDENIKLNYRRLALKWHPDKHKGDSTVTAKFQEINEAYNVLSDPAKRCDYDLTGACEIEKYSLQEYLARFKGMILTCNGLGINHTDRWSPHLIESIDSLDE 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g01209 124 SUPERFAMILY Chaperone J-domain 8 98 IPR036869 -
Aip03g01209 124 Gene3D DnaJ domain 2 94 IPR036869 -
Aip03g01209 124 CDD DnaJ 12 66 IPR001623 -
Aip03g01209 124 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 4 116 - -
Aip03g01209 124 SMART dnaj_3 11 69 IPR001623 -
Aip03g01209 124 Pfam DnaJ domain 12 74 IPR001623 -
Aip03g01209 124 ProSitePatterns Nt-dnaJ domain signature. 54 73 IPR018253 -
Aip03g01209 124 PRINTS DnaJ domain signature 14 32 IPR001623 -
Aip03g01209 124 PRINTS DnaJ domain signature 32 47 IPR001623 -
Aip03g01209 124 PRINTS DnaJ domain signature 49 69 IPR001623 -
Aip03g01209 124 PRINTS DnaJ domain signature 69 88 IPR001623 -
Aip03g01209 124 ProSiteProfiles dnaJ domain profile. 12 77 IPR001623 -
Aip03g01209 124 PANTHER DNAJ PROTEIN-LIKE 4 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g01209 Aip-Chr3 11989977 11992526 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g01209 3 74 C2H2 Transcription Factor Family AT1G74250 40.260 1.48e-11 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g01209 - - gmx:100305987 219.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g01209 03 11989977 11992526 Aip03g01209 03 11989977 11992526 ECH