Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g01202 ATGAGAGACCTTTGCAGAAACTTCCAGCGTGGCAGCTGTCAATACGGAGATAGGTGTAAATTTATACATGCTGTGGCACAACAACAAGGGAAGCCTAATAATAGTTTTCATGGTTTTGGGGGACAGAATAGTTTTTACCAACAGCAACAGCAACAGCAACAGCAAAATGTTAACCCTTTTGGATTTGGGTCTAAATCTGCTTCACAACCACACCAACAGCAGCAAAAGACCAATCCTTTTGGCTTTGGGCCTTTTGAAAACAAATGGACTCGGGGTGGCGCTTCGAGGCAATCTGATAACAACCCCCTACCGGCGAATCATGAATGTACAGATCCTGAGGTCTGCAAGCGCCAGATTGCTGAAGATTTCAAGCAAGAGAGGCCACTCTGGATACTTACATGCTATGGTCATTCTAAAGGTGCACCTTGTGATATAGTTGGTGATATTAGCTATGAAGAACTGAGGGCAGCAGCTTATGAGGATGCGAAGCGAGGGATGAACTTGCAATCAATTGTTGAGAGAGAGAGAAATACACTGAATTCCAAGTTGGCTGAGTTCGAGAAACTACTTTCTGAACCCTACAGAATGCCATTTAATCCTTCTCTTAACAGTCAAAATCACCAGAATGCAAATCCGTTTTCAATGCCTATGCAAAATAATGGCCAGCATAATGCAAATCCATTTTCAATAACTACACAAAACAATGGTCCTGTGTCAGTCTCAAGCTTTAGCCAACTGGGTGCTTCATTGAACACGGGATTTGATAGGCCCTCTGCACAAGCACCAAACACTCCGCCACAGTCTAGTTTCTTCGGAAGTGGAGGAAACACTTTTACACCCAACACTGCAAACATAAGTGGCAGAGGCTTCTCAGGTGCTCCAAGCAGCCCCTTCTCTACCCCAGCGGTGTCAACAATGTTCCCGAATTCAACTTCTCAGCAGCCATCCTTTGGCTTCAATGACTTGAGTTCCACTCCAATGTTTCAGACTACACCAGATGTTCAATCTCCAAGCATGTCCCAGGGAGAGAATGTTTCCACAGATCTCAGTATTTGGTTAAAAGAGAAATGGAATCCTGGAGAGATTCCCGAAGAAGCTCCTCCAGATTCAGTTGTTCGGTAG 1122 0.4456 MRDLCRNFQRGSCQYGDRCKFIHAVAQQQGKPNNSFHGFGGQNSFYQQQQQQQQQNVNPFGFGSKSASQPHQQQQKTNPFGFGPFENKWTRGGASRQSDNNPLPANHECTDPEVCKRQIAEDFKQERPLWILTCYGHSKGAPCDIVGDISYEELRAAAYEDAKRGMNLQSIVERERNTLNSKLAEFEKLLSEPYRMPFNPSLNSQNHQNANPFSMPMQNNGQHNANPFSITTQNNGPVSVSSFSQLGASLNTGFDRPSAQAPNTPPQSSFFGSGGNTFTPNTANISGRGFSGAPSSPFSTPAVSTMFPNSTSQQPSFGFNDLSSTPMFQTTPDVQSPSMSQGENVSTDLSIWLKEKWNPGEIPEEAPPDSVVR 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g01202 373 PANTHER MAKORIN-RELATED 2 371 IPR045072 -
Aip03g01202 373 MobiDBLite consensus disorder prediction 91 105 - -
Aip03g01202 373 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 16 2 371 - -
Aip03g01202 373 Gene3D - 1 61 - -
Aip03g01202 373 ProSiteProfiles Zinc finger C3H1-type profile. 4 26 IPR000571 GO:0046872
Aip03g01202 373 SMART c3hfinal6 1 25 IPR000571 GO:0046872
Aip03g01202 373 Coils Coil 172 192 - -
Aip03g01202 373 MobiDBLite consensus disorder prediction 32 81 - -
Aip03g01202 373 SUPERFAMILY CCCH zinc finger 3 26 IPR036855 GO:0046872
Aip03g01202 373 MobiDBLite consensus disorder prediction 32 109 - -
Aip03g01202 373 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 2 23 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g01202 Aip-Chr3 11885747 11889171 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Aip03g01202 zf-CCCH 1.5e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g01202 K14321 - gmx:100814339 443.736