Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g01196 ATGGGGAGATCACGAAGTGGTTATGATGAGAGTGGGTTGAAGAAAGGTCCATGGACAGCGGAAGAGGATAGAATATTGGTGGATTACATAAACAAAAACGGCCATGGAAGTAATTGGCGAGCGCTTCCTAAGATTGCAGGTCTAAACAGATGTGGAAAGAGTTGCAGGCTGAGGTGGAGTAACTACCTCAGGCCTGGTATCAAGAGAGGAAAATTCTCTCAAGAAGAAGAGAAACTCATCATTAACTTACATCAACTTCTTGGCAATAAGTGGTCAGCAATAGCAAGTCATCTACCAGGAAGAACTGACAATGAAATCAAGAATTTCTGGAACACTAATCTTAGAAAGAAGCTTCTACGAATGGGGTTAGATCCAGTGACTCATCGTCCAAGATTAGATCATAATCATAATAATCAACTTCAACTTCTTTCCAATCTTCAACACTTGCTTCTTGCTGCAAACATTCTCAACAATAATAACAACAACAATAATGCTCTATTAAGTACTCTTCTTATTAACTCTGATCATGCCAAACTCCAAATCCTCCAAAACATGCTTCAAATCCTTGCTACTACTACTACTACTAATAATAATAATCTTGCACTAAACTTGGAGCCACTACTTAATCATCAACAATTTGGTCCATTAACCTCATCATCATCATCATCATCAGTTCCAAATGGTTTTTATGAATCTTTAGGGTTGAATGAATCTATGCTCCAAAACCTTATTTGCAGTAATGATTCTTTCCCTTGTCAAAATCAGCCCAATTTCCAAAACTTTGAAGCTCCTCCTCATGATGATAATCAGCACAACATGAATGGTGGTAGTTGCATGATGAAGTCTGAAAATGTTAATAATAATAATAATGAGAAAGTTGTTGTTGATGGCACAAATTCTTCTTCTACTCCTACAACACCATTGAATTGTTATTCACTTCCAAATCTGGTTTCAGCCTCATCACCTGATCATGAATATTCCAACAAAGTAAATAATAATAATAATAATAATAATAATAATAATAATAATAATTCTCCAACTTCAACCAACAACTTTGAAATGTGGACAGATTTCATGTATGAGGAAGCAAGTGATGCTTATTGGAAACACATCATAGATCAAGAATCTAACCAGCCATAG 1140 0.3579 MGRSRSGYDESGLKKGPWTAEEDRILVDYINKNGHGSNWRALPKIAGLNRCGKSCRLRWSNYLRPGIKRGKFSQEEEKLIINLHQLLGNKWSAIASHLPGRTDNEIKNFWNTNLRKKLLRMGLDPVTHRPRLDHNHNNQLQLLSNLQHLLLAANILNNNNNNNNALLSTLLINSDHAKLQILQNMLQILATTTTTNNNNLALNLEPLLNHQQFGPLTSSSSSSSVPNGFYESLGLNESMLQNLICSNDSFPCQNQPNFQNFEAPPHDDNQHNMNGGSCMMKSENVNNNNNEKVVVDGTNSSSTPTTPLNCYSLPNLVSASSPDHEYSNKVNNNNNNNNNNNNNNSPTSTNNFEMWTDFMYEEASDAYWKHIIDQESNQP 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g01196 379 PANTHER MYB TRANSCRIPTION FACTOR 9 375 - -
Aip03g01196 379 CDD SANT 17 63 IPR001005 -
Aip03g01196 379 Gene3D - 71 118 - -
Aip03g01196 379 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 63 IPR017930 -
Aip03g01196 379 ProSiteProfiles Myb-like domain profile. 10 63 IPR001005 -
Aip03g01196 379 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 9 375 - -
Aip03g01196 379 CDD SANT 71 114 IPR001005 -
Aip03g01196 379 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Aip03g01196 379 Gene3D - 8 68 - -
Aip03g01196 379 SMART sant 68 116 IPR001005 -
Aip03g01196 379 SMART sant 14 65 IPR001005 -
Aip03g01196 379 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Aip03g01196 379 SUPERFAMILY Homeodomain-like 12 110 IPR009057 -
Aip03g01196 379 MobiDBLite consensus disorder prediction 321 350 - -
Aip03g01196 379 Pfam Myb-like DNA-binding domain 69 114 IPR001005 -
Aip03g01196 379 Pfam Myb-like DNA-binding domain 15 63 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g01196 Aip-Chr3 11850091 11851631 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g01196 1 373 MYB Transcription Factor Family AT5G16770 43.421 3.21e-83 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aip03g01196 Myb_DNA-binding 7.5e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g01196 K09422 - gmx:547488 327.791
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g01196 03 11850091 11851631 Aip03g01196 03 11850091 11851631 ECH