Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g01175 ATGTGCAGCTTCAAGGGCTACCAAGACACACTCTACGCCCATTCCATGCGTCAATTCTACAGCGACTGCCACATTTATGGCACCGTTGATTTTATTTTCGGTAACGCCGCCGTAGTCTTCCAAAATTGCAACATCTTCCCTCGCCTCCCTATGACCGGCCAATTCAACTCAATTACCGCACAAGGCAGAACCGATCCCAACCAAAATACCGGAATCTCCATACACAACGCAACGATTCGACCCGCTGACGATTTGGCCCCTCGCGTTGGTGTTGTGAAAACGTACCTTGTTGAGGACCTACCTGAGAGCAATGCAGCAAGTTTGTTATCATTCAGTAGATGA 342 0.4883 MCSFKGYQDTLYAHSMRQFYSDCHIYGTVDFIFGNAAVVFQNCNIFPRLPMTGQFNSITAQGRTDPNQNTGISIHNATIRPADDLAPRVGVVKTYLVEDLPESNAASLLSFSR 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g01175 113 Gene3D - 1 98 IPR012334 -
Aip03g01175 113 PANTHER PECTINESTERASE 2 96 - -
Aip03g01175 113 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 7-RELATED 2 96 - -
Aip03g01175 113 Pfam Pectinesterase 2 96 IPR000070 GO:0030599|GO:0042545
Aip03g01175 113 ProSitePatterns Pectinesterase signature 2. 25 34 IPR033131 -
Aip03g01175 113 SUPERFAMILY Pectin lyase-like 2 96 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g01175 Aip-Chr3 11651542 11653582 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g01175 2 102 Carbohydrate Esterase AT4G02330 73.267 7.56e-50 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g01175 K01051 - ahf:112770241 188.348