Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g01171 ATGCCACCATCATCAGAAACAACTTATTCCATTGATGCACAAAAAACCAACTTCAACCAAACTTACCAAACTACCCACATATTCAGATCAAAATTACCAGACATACCCATCAACAATACTATTCCTCTCCACACTTATTGCTTTCAAAAGCTCCCCCAAGTCTTCCACCGCCCATGTCTCATCACGGGTGATGGCAAGACTTACACCTACGGTGATATCCACCGCGCTTCTAGAAGCTTTGCCGTGGGCCTCTTCAACCTTGGAATCCGCAAAGGTGATGTCATCATGATCCTACTCCCAAACTCTCCAGAATTCGTGTTCTCCTTTTGGGCTGCTTCTATGCTTGGTGCAGTTTCCACCACTGCCAACCCTTCTTACACCTCCGTTGAAATCACAAAGCAGCTCAAAGCCTCCAAGGCCAAAATCGTCATTACACGTTCCATGCACGTGCACAAGCTCAAACAAGAACAAGAAAACAGCTTTATAGTGATAACTGTAGACAATCCACCAGAGAAGTGCATGAGCTACTCGGTGGTTTCCAGCATGGAAGGGAAGCTGCCGGAGGTGGATATCGACCCTGACGACATGGTGGCACTGCCATTTTCCTCCGGCACGACGGGGCTGCCGAAGGGTGTGGTTCTGACACACAGAAGTCTGATAACAAACGTGGCTCAACAAGTTGAGGGAGAGAACCCTAACTTGCACCTGAAGGAAGAGGATGTAGTGCTTTGCGTTCTACCATTGTTTCACATTTACGCACTACACTCGGTGATGTTGTGCTCTATGAGAGTAGGGTGTAGGGTGTTGCTTATGGAGAAGTTTGAGATGAGGGTGATGTTGGAGCTTGTGGAAAAGCACAGGGTTTCGGTTTTGATGGCGGTACCGGCGTTGGTGGCAGCACTTTCAAAGAACCCGGCGGTGGAGGAGTATGACCTTAGGTCCATGCGGATGGTGATGTCGGGAGGTGCCCCACTTGCAGAGAATATTGAGGAGGCTTTTCATAGTAGATTGCCTCAAGCAATCCTTCGACAGGCTTTAGGAATGACAGAATCAGGACCTGTAATATCGATGTCACTAAGTTTTGCAAAGAATCCAATGACAACCAAGTTAAGATCATGCGGTACTGTTATTAGAAATGCAGAGTTGAAGATCATTGATCTTTTGACAGGCTCTTCTCTCCCTTATAATACTTCGGGTGAGATTTGCATCCGAGGTCAACAAATTATGAAAGGATACTTGAATGATGAGAGGGCCACAGCAGAAGCTATTGATGAAGAGGGTTGGCTTCATACCGGTGATATTGGCTATGTAGATGATGATGATGAGATTTTCATTGTTGATAGACTCAAGGAACTCATCAAATTTAAAGGCTTCCAGGTATATATGCAAAAAGATGATGTAGCTGGTGAAGTTCCAGTTGCTTTTGTGGTGAGGTCATCAAATGATCCTATTACTGAAGATGCTGTCAAGGAATTTATAGCTAAACAGGTAGTATTTTACAAGAGACTACATAGAATAATTTTTATTGACGCAATCCCAAAATCTTCAATCGGCAAGATATTAAGAAAAGAACTCAAAGCAACTCTATCTAATTAG 1596 0.4442 MPPSSETTYSIDAQKTNFNQTYQTTHIFRSKLPDIPINNTIPLHTYCFQKLPQVFHRPCLITGDGKTYTYGDIHRASRSFAVGLFNLGIRKGDVIMILLPNSPEFVFSFWAASMLGAVSTTANPSYTSVEITKQLKASKAKIVITRSMHVHKLKQEQENSFIVITVDNPPEKCMSYSVVSSMEGKLPEVDIDPDDMVALPFSSGTTGLPKGVVLTHRSLITNVAQQVEGENPNLHLKEEDVVLCVLPLFHIYALHSVMLCSMRVGCRVLLMEKFEMRVMLELVEKHRVSVLMAVPALVAALSKNPAVEEYDLRSMRMVMSGGAPLAENIEEAFHSRLPQAILRQALGMTESGPVISMSLSFAKNPMTTKLRSCGTVIRNAELKIIDLLTGSSLPYNTSGEICIRGQQIMKGYLNDERATAEAIDEEGWLHTGDIGYVDDDDEIFIVDRLKELIKFKGFQVYMQKDDVAGEVPVAFVVRSSNDPITEDAVKEFIAKQVVFYKRLHRIIFIDAIPKSSIGKILRKELKATLSN 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g01171 531 ProSitePatterns Putative AMP-binding domain signature. 199 210 IPR020845 -
Aip03g01171 531 Gene3D - 449 531 IPR045851 -
Aip03g01171 531 Pfam AMP-binding enzyme C-terminal domain 460 519 IPR025110 -
Aip03g01171 531 Gene3D - 18 448 IPR042099 -
Aip03g01171 531 CDD 4CL 32 525 - -
Aip03g01171 531 Pfam AMP-binding enzyme 57 455 IPR000873 -
Aip03g01171 531 PANTHER 4-COUMARATE--COA LIGASE 3 26 527 - -
Aip03g01171 531 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 26 527 - -
Aip03g01171 531 SUPERFAMILY Acetyl-CoA synthetase-like 40 529 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g01171 Aip-Chr3 11605197 11608232 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g01171 24 459 Monolignol Biosynthesis Gene Families AT1G65060 65.079 0.0 575
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g01171 K01904 - gmx:547930 671.774