Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g01170 ATGGCACCATCATTAGTAGCAACTTATTCCGTTGATCCAAAAAAAACCAACTTCATCAACCAAAGTTACCAAACTACCCACATCTTCAAATCAAAATTACCAGACATACCTATCAACAATACCATTCCCCTCCACACTTATTCGTTTCAAAAACTCCCCCAAGTCTACAACCGCCCGTGTCTCATCACGAGCGATGGCAAGGAGTACACCTATGGTGATGTCCACCGCGCATCTAGAAGCTTGGCCATGGGCCTTTTCAACCTTGGAATCCGGAAAGGTGACATCATAATGATCCTACTCCCAAACTCGCCGGAATTCGTGTTCTCCTTTTGGGCTGCTTCTATGCTGGGGGCAGTTTCGACCCTTGCCAACCCTTCTTACACATCTCTTGAAATCACGAAGCAGCTCAAAGCCACCAAGGCCAAAATCGTCATCACACATGCCATGCACGTGCATAAGCTCAAACAAGATCAACAAGAAGAAAACACATTCACAGTGATAACTGTGGACAAGCCACCAGAGAAGTGCATGAGTTTCTCGACGGTTTCCAGAAATGAAGGAAAGCTGCCAGAGGTGGATATTAACCCTGACGACATGGTGACACTGCCATTTTCCTCCGGCACGACGGGGTTATCAAAGGGTGTGATTCTAACACACCGGAGTCTGGTTACAAACGTGGCTCAGCAGGTTGAGGGAGAGAACCCTAACTTGCATCTGAAGGAAGAGGATGTAGTGCTTTGTGTGCTACCGTTGTTCCACATTTACGCACTACACTGTGTGATGTTATGCTCTATGAGAGTAGGGTGTAAGGTGTTGCTTATGGAGAAGTTTGAGATGAGGGCGATGTTGGAAGTTGTGGAGAAGCAGAGGGTATCAGTAGTGATGGCAGTGCCGCCGTTGGTGGTGGCACTGTCAAAGAACCCGGCAGTGGAGGAGTATGAGCTTAGCTCCATCAGGATGGTGATGTCTGGAGGTGCCTCGCTTGCAAATGACATCGAGGATGCTTTTCATAGTAGGTTGCCTCAAGCTATCCTTCGACAGGCTTTGGGAATGACAGAATCAGGACCAGTGATATCAATGTCATTAAGTTTTGCAAAATATCCAATGACAACTAAATTAGGATCATGCGGTACTGTCATCAGAAATGCAGAAATGAAGATTATTGACCCTCTAACAGGCTCTTCTCTCTTTTATAATACTCCGGGTGAAATTTGTATCCGAGGTCAACAAATTATGAAAGCTGGTGAAGTTCCAGTTGCTTTTGTGGTGAGGTCATCAAATGACCCTATTACTGAAGATGCTGTAAAGGACTTTATAGCTAAACAGGTAGTATTTTACAAGAGGCTACATAGAGTAATTTTCATTGACGCAATCCCAAAATCTTCAATGGGCAAGATATTAAGAAAAGAACTCAAAGCAAAGCTCGCTAGCTACCATTAA 1440 0.4486 MAPSLVATYSVDPKKTNFINQSYQTTHIFKSKLPDIPINNTIPLHTYSFQKLPQVYNRPCLITSDGKEYTYGDVHRASRSLAMGLFNLGIRKGDIIMILLPNSPEFVFSFWAASMLGAVSTLANPSYTSLEITKQLKATKAKIVITHAMHVHKLKQDQQEENTFTVITVDKPPEKCMSFSTVSRNEGKLPEVDINPDDMVTLPFSSGTTGLSKGVILTHRSLVTNVAQQVEGENPNLHLKEEDVVLCVLPLFHIYALHCVMLCSMRVGCKVLLMEKFEMRAMLEVVEKQRVSVVMAVPPLVVALSKNPAVEEYELSSIRMVMSGGASLANDIEDAFHSRLPQAILRQALGMTESGPVISMSLSFAKYPMTTKLGSCGTVIRNAEMKIIDPLTGSSLFYNTPGEICIRGQQIMKAGEVPVAFVVRSSNDPITEDAVKDFIAKQVVFYKRLHRVIFIDAIPKSSMGKILRKELKAKLASYH 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g01170 479 Gene3D - 19 414 IPR042099 -
Aip03g01170 479 SUPERFAMILY Acetyl-CoA synthetase-like 41 477 - -
Aip03g01170 479 Pfam AMP-binding enzyme C-terminal domain 403 465 IPR025110 -
Aip03g01170 479 PANTHER 4-COUMARATE--COA LIGASE 3 27 413 - -
Aip03g01170 479 PANTHER 4-COUMARATE--COA LIGASE 3 414 474 - -
Aip03g01170 479 ProSitePatterns Putative AMP-binding domain signature. 202 213 IPR020845 -
Aip03g01170 479 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 27 413 - -
Aip03g01170 479 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 414 474 - -
Aip03g01170 479 Pfam AMP-binding enzyme 57 413 IPR000873 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g01170 Aip-Chr3 11588383 11592397 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g01170 25 413 Monolignol Biosynthesis Gene Families AT1G65060 60.660 1.14e-166 478
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g01170 K01904 - nnu:104611494 510.76