Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g01148 ATGGAAGATGGAAAGCATAAATCAAGGAGAGAAGATTCTGAGGTGAAGGAAGATGATTCCAAGAGGAGCCACCGTGACAGGGGCGGGGAAAAGGATAAGGATAGAAGCAATGGGAAGCATAGGGATAGGGAGAAGAGGGACCGCGACCGGGATAGCAGAAGGCATGATAGAGATCATAGTAGTGATGATTCTGATGATAGGTATGAGAGGGAGAGGGAGAAGGAGAAGCGCAGAGATAAAGACAAGGAAGAAAGAAGAGCTCGCGAGAAGAAAAGAGAAAGGGAGAGGGAAAGGGAAAAGGAAAGGGAAAAGGAAAGGGAGAGGGAAGAAAAGGAGAGGGAAAGGAGAGAAAGGGCGAAGGAGAAAGAAAGAGAGAGAGAAAGAGAAAGAGAAAGGAGGGAAGATAGAGAGAGGGGGCGGGAGAGGGAACGTGAGCGTGAAAAGGATAAGGATAGAAGGGAGCGTGAGAGAGAGAAGGAAATTGAAAGAGAAAGGGGGAGGAGAGTGCGCGACCGGGAGAAGCGTAGGGAAGTTGATAGTGATTATAGTGATGATGATTCTAGGGAGAGGGAGAGAGACAGGAAGAGGCACAAGAACTCGGATGCCAAGGTGAAGGAGAGAAAACCTACTCATGAAGAGGAGATAGAGGAAGAACACAAAAGATTGGATGAAGAAATGGAAAAGAGGAGGAGAAGAGTTCAGGAGTGGCAAGAGCTGAGGAGGAAGAAGGAAGAAGCTGAGAGAGAAAAGCAGGGTGAAGCAAGTGCTAGTGAACCAAAGTTGGGAAAGGCCTGGACCCTTGAAGGGGAATCTGATGATGAAGAAGCAACTGGTACAGGGAAGCCAGATACTGCGATGGATGTAGATGAAGATGAAAAACCTGTTGATAAAGAGCCTGGGGATCCTATGGTGGCAGATGGTGATAATGGGGCAATTACGTCTGATTTACAAGAAGGAACTGCTGGTGCTCCTGAGGATGAGGAAATTGATCCATTGGATGCCTTCATGAATTCTATGGTTCTACCTGAAGTTGAAAAGCTGAACAACACTGTTTGCTCTTCAATACCTGATAAAACTAATGACAAGAAACTCAAGGATAGAGGGGATGAGCAGGGTCGTAGTGGACAGGCAAGGAAAGTTTCCAATAATAAATCGATTGGAAGAATAATTCCTGGTGAAGACTCTGACTCTGATTATTCAGATCTTCAAGTTGACGATGACGACATTGAAGAAAATGATGAGGAGTTTATGAAAAGAGTGAAGAAGTCAAAAGCTGATAAGCTGTCTATAGTTGACCATTCAAAGATTGATTATCAACCTTTCAAGAAAAATTTCTACATTGAAGTGAAGGATGTCTCAAGGATGACTCCTGAAGAAGTTGCTGCATACCGGAAGGAGCTGGAGTTGAAGATACATGGGAAGGATGTTCCAAAGCCAGTAAAATCATGGCATCAGACTGGACTTACTAGCAAAATTTTAGAGACAATAAGAAAGCTTAACTACGAAAAGCCGATGCCTATTCAAGCCCAGGCACTGCCTGTAATAATGAATGGTCGAGACTGCATTGGCATTGCTAAAACTGGTTCAGGCAAAACACTTGCTTTTGTTTTGCCTATGTTGAGGCACATCAAGGATCAGCCACCAGTTGTTACTGGAGATGGACCAATTGGGCTTATCATGGCTCCTACAAGGGAGCTTGTTCAACAGATTTATAGTGATATAAAGAAGTTTGGGAAGGTACTGGGTCTAAGATGTGTACCTGTGTATGGAGGTTCTGGTGTTGCTCAACAAATTAGTGAGTTGAAGCGTGGAGCTGAGATAGTGGTTTGTACTCCAGGTAGGATGATTGACATACTATGTACCAGTGGTGGCAAAATAACTAACCTGCGCAGGGTTACTTATTTGGTCATGGATGAGGCTGATAGAATGTTTGACATGGGGTTTGAACCCCAAATCACAAGAATTGTTCAGAATATCCGACCAGATCGTCAAACTGTTCTATTTTCTGCTACTTTCCCCCGCCAGGTTGAAATTCTTGCCCGCAAGGTTCTAAATAAACCTGTTGAAATACAAGTTGGTGGCAGAAGTGTTGTGAACAAGGACATAACACAGCTGGTGGAGTTGAGACCAGAAAAAGAAAGATTTCATAGGCTATTAGAGATATTGGGTGAATGGTATGAGAAAGGAAAGATTTTGATATTTGTCCAGTCACAGGAAAAATGTGATGCTTTGTTCAAGGATTTGCTAAAGTCTGGTTATCCTTGCTTATCTCTTCATGGAGCTAAGGACCAGACAGATCGTGAATCCACAATTGCTGATTTCAAAAGCAATGTCTGCAATATGTTGATTGCAACTAGTATTGCTGCCAGGGGACTAGATGTCAAGGAGCTTGAATTGGTTATCAATTTTGATGTTCCTAATCACTATGAAGATTATGTTCATCGTGTTGGCCGCACTGGCAGAGCAGGCCGAAAGGGTTGCGCTATTACTTTTATTTCGGAGGAAGAAGCAAGATATGCACCTGATTTGGCAAAAGCATTGGAGCTATCTGAGCAAGTTGTTCCTGATGACCTGAAAGCACTTGCTGATGGCTTTATGGCAAAAGTGAAACAAGGGCTTGAGCAGGCTCATGGAACTGGTTATGGAGGCAGTGGCTTTAAATTTAATGAAGAAGAAGACGAGGAGAGGAGAGCAGCGAAGAAAGCTCAAGCCAAGGGATATGGGTTTGAAGAGGATAAATCAGATTCGGAAGATGAAGATGAAAATATTAGGAAGTCGGGAGGTGACATCTCACAGCTTGCTCATATTCTTGCTGCCTCAAAAGGAACTGTCCCTGCTATACCTAGCCCCATCTCTCCTGCTCAGCTGATTTCTAATGGTGGACTAACTGTTCCGTTGCCAGCTGTTCTTGGTAATCTCCAAACTACTACAGTTTTGCCTACAGGGCTTCCCCTTACTACAAATGATGGGGCAGCTCGGGCAGCATTAGCTGCTATTAACCTGCAGCACAACTTAGCTAAGATACAGTCTGAAGCATTGCCTGAGCATTATGAAGCTGAACTAGAGATAAATGATTTCCCTCAAAGTGCTCGGTGGAAAACATCACAAATCAAGCTTTACAACTTCCTGGTGGATCTCAACCTGGCAAATACTCTGTTGTTTAAAGGATGGGCCTTCTGGGGCTTGCTTACATCCTCAATTTTGTCATTGCCCATACTTGACTTGTGGCTTTCAATGGTGGCAATCATGGCACGGCAGCAGCGGTTTCTTTTTTTTCATCCAGGTTCTGGTTACAAGATACTTTATCAAAAAGAGAAAAGATGGCAAGCAGGTGGTCGTGGTCATACATGTATGTATGGGAAGCTCTGGCATGCTTTGTTTCTGGAAGGGTTTGAAAACCTCTGTCCTACCATAACATATAGGCCTTTGCAGCTGAAGAACCTGATGGTGTGA 3453 0.439 MEDGKHKSRREDSEVKEDDSKRSHRDRGGEKDKDRSNGKHRDREKRDRDRDSRRHDRDHSSDDSDDRYEREREKEKRRDKDKEERRAREKKREREREREKEREKEREREEKERERRERAKEKERERERERERREDRERGREREREREKDKDRREREREKEIERERGRRVRDREKRREVDSDYSDDDSRERERDRKRHKNSDAKVKERKPTHEEEIEEEHKRLDEEMEKRRRRVQEWQELRRKKEEAEREKQGEASASEPKLGKAWTLEGESDDEEATGTGKPDTAMDVDEDEKPVDKEPGDPMVADGDNGAITSDLQEGTAGAPEDEEIDPLDAFMNSMVLPEVEKLNNTVCSSIPDKTNDKKLKDRGDEQGRSGQARKVSNNKSIGRIIPGEDSDSDYSDLQVDDDDIEENDEEFMKRVKKSKADKLSIVDHSKIDYQPFKKNFYIEVKDVSRMTPEEVAAYRKELELKIHGKDVPKPVKSWHQTGLTSKILETIRKLNYEKPMPIQAQALPVIMNGRDCIGIAKTGSGKTLAFVLPMLRHIKDQPPVVTGDGPIGLIMAPTRELVQQIYSDIKKFGKVLGLRCVPVYGGSGVAQQISELKRGAEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVELRPEKERFHRLLEILGEWYEKGKILIFVQSQEKCDALFKDLLKSGYPCLSLHGAKDQTDRESTIADFKSNVCNMLIATSIAARGLDVKELELVINFDVPNHYEDYVHRVGRTGRAGRKGCAITFISEEEARYAPDLAKALELSEQVVPDDLKALADGFMAKVKQGLEQAHGTGYGGSGFKFNEEEDEERRAAKKAQAKGYGFEEDKSDSEDEDENIRKSGGDISQLAHILAASKGTVPAIPSPISPAQLISNGGLTVPLPAVLGNLQTTTVLPTGLPLTTNDGAARAALAAINLQHNLAKIQSEALPEHYEAELEINDFPQSARWKTSQIKLYNFLVDLNLANTLLFKGWAFWGLLTSSILSLPILDLWLSMVAIMARQQRFLFFHPGSGYKILYQKEKRWQAGGRGHTCMYGKLWHALFLEGFENLCPTITYRPLQLKNLMV 1150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g01148 1150 CDD DEADc_DDX46 470 691 - -
Aip03g01148 1150 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 701 862 IPR001650 -
Aip03g01148 1150 MobiDBLite consensus disorder prediction 348 403 - -
Aip03g01148 1150 Gene3D - 433 690 IPR027417 -
Aip03g01148 1150 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 417 839 IPR027417 -
Aip03g01148 1150 PANTHER LOW QUALITY PROTEIN: DEAD-BOX ATP-DEPENDENT RNA HELICASE 42-LIKE 151 936 - -
Aip03g01148 1150 MobiDBLite consensus disorder prediction 358 374 - -
Aip03g01148 1150 SMART helicmild6 742 823 IPR001650 -
Aip03g01148 1150 Coils Coil 208 256 - -
Aip03g01148 1150 MobiDBLite consensus disorder prediction 880 924 - -
Aip03g01148 1150 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 636 644 IPR000629 -
Aip03g01148 1150 Coils Coil 70 139 - -
Aip03g01148 1150 MobiDBLite consensus disorder prediction 887 924 - -
Aip03g01148 1150 CDD SF2_C_DEAD 702 832 - -
Aip03g01148 1150 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 151 936 - -
Aip03g01148 1150 MobiDBLite consensus disorder prediction 265 303 - -
Aip03g01148 1150 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 628 862 IPR027417 -
Aip03g01148 1150 SMART ultradead3 500 705 IPR014001 -
Aip03g01148 1150 MobiDBLite consensus disorder prediction 1 336 - -
Aip03g01148 1150 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 481 509 IPR014014 GO:0003724
Aip03g01148 1150 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 512 690 IPR014001 -
Aip03g01148 1150 Pfam Helicase conserved C-terminal domain 715 823 IPR001650 -
Aip03g01148 1150 Pfam DEAD/DEAH box helicase 506 677 IPR011545 GO:0003676|GO:0005524
Aip03g01148 1150 MobiDBLite consensus disorder prediction 1 256 - -
Aip03g01148 1150 Gene3D - 691 865 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g01148 Aip-Chr3 11326476 11331717 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g01148 482 838 Eukaryotic Initiation Factors Gene Family AT3G13920 35.833 2.14e-56 200
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g01148 K12811 - gmx:100784306 1306.97