Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g01109 ATGATGGAGTTTGTGGGCAAAATCGTGAAGAAAGAGGTCAAAGGTGTTGGGTTTGTCACCGGAACCGTCAAATCCTACGACCCTTCTTCAAGTTTCGTCGAGATCCTCTACGACAACGGCGATTCTGAGGAGCTGGAATCAAACGAAGTGGTTTTGCTTCTTCAACAAGCTCAGCCGGAGCTCGCTAAGCCAAAGACTCGGGTTGGCCGGAAGCCCAAGAAGCGCCGCCGTGTTGAGAAGAAGGCCGGAGCTGGAGACAGTTCAGGTAATGCCAATGGAAATTTGGTTTTGGAAGTTAGTGAAATTAGGGATAATTCGGAAGTGAATGGTGAATTAGGTCTTGGAATTGAGGAAAAGCTAGGAAATGGGAATGCTAATGCGAATGGGAGTGTGGAGTCAATTGTGGGTGATGGAACTCTTGGGAGGGAAATTGGGGTTGAGGGGGATTTAAATTTGAATAAGGATGTAGCCGTAAATGGAAGTTGTCTTAGGGATGAGCTTGATTTGAATTCTGGGATTAATCTCAATGAGGATTTGAATCTTAATGATGGGTGTGGTTTATTGACTTTTGATGGCACTGAGGTTGGTTTAAAGAGAAGAGATTGTATTGACTTGAATTTGGATGTCAATAATGACGATGATGTCAGCATGAATGGGGGATCTTTGGGCGGCAGGAAGTTGCAGCGGGAATGTAATTTTGATTTGAATGTCGAGGTGTGCGAAGATATCAAGGAAACCCGCGGGGAAGTTGCCAATGGCAATGGTATTTATGAGGCAAATGCCATATTGGGTAAGATGGGTCAGCTCCAAGGAGACATGACAAATCTTAATCAGAGATCTTTGGAAGTTGATGATGTTCGTAGTGATTTGAATGAGGTTTCCAATGATTTCACACCAGAGGTAGATCATGTTTCTGCCAACCATGCAGCTACAGATGCTTCTTTGTGTTCGATTGAAGGAGAGGAAGGCAACGATAACAGAGGCGATGTAGCAGCTGTTGGCTCTCTTCAGGTTTCAGATGTTGTTTCTTTGGAGACTCAGCAAATGGATAGTCCTTGCGAAGCTGGTTTAGTCGTAACTCATGAAGACCAAGAGGAGACAGGAAGTCTTAGCAAACAAGGAAGAGGTCGAAGGAAAAGAAGAAAAATAGCAGATGAACTAAATAACACCCCAGAGACAGGTTTAAGGAGGAGCTCTCGCCGGGCATTAGCTAGAAAACATGCTTCAAGCGTCATAGTCTCACTGGAGATGGATGATCCTATGGTGTCCGTGGAAACCAGTGCCATGGCAGAAGAGAAACCTGTAACTGTAATATCTGGTCATGAACAGTCCAAAATTTGTCAGGCGAAGTTGCAATTACCCCCATCTTCCCAAAATTTAAATTTAGATGATGTTCCTGTTCTTGAAGTCTTTTCTATTTATGCTTGTTTAAGGTCATTCAGCACTTTATTATTTTTGAGTCCATTTGAGTTGGAGGATCTTGTAGCTGCTTTGAAGTCCAAAACCCCCAGTATATTATTTGATAGCATTCATGTTTCTATTTTGGAAACTCTGAGAAAGCATTTGGAATACCTTTCCAATGAGGGTATCCAATCTGCATCTGATTGTCTGAGGAATCTTAATTGGGATTTTCTGGACATTGTCACATGGCCTATTTTCATGGCCGAGTACCTTCTGATTCATGGTTCAGGATTTAAAACTAGCTTTAATCTTAACTACTCAAATTTCACAGCTGACTACTACAAACAACCTGTGAATGTGAAGGTTGGGATTCTTCAGTATCTCTGTGATGATATGATCGAAGCAGAAGCAATAAGGTCTGAGCTTAACAGGAGATCGTTGGTAACTGAGAACAGTGTTGGTTCTGATCAGAATATGTATTTTGACACTTGTAAGAAACGGAGAGCTGGAACAGATGTGTCTGGTGGCTCCTGCTTGACTGAGGAAATTGCAGATGACACTGACTGGAACAGTGATGACTGCTACCTTTGCAAGATGGATGGTAATTTAATATGCTGTGATGGTTGCCCTGCTGCATTCCACTCCAAGTGTGTTGGAATCGCAAGTGACAATCTGCCTGAAGGGGACTGGTATTGCCCTGAGTGTGCAATTGGCACACACAGGGCATGGATGAAATCACGTAGGTCACTTCGAGGAGCAGATTTGATAGGGAGTGATATTCATGGCCGTCTTTATTTTAGCAGCTATGGTTACTTGTTAGTGTCGGACTCATCTGATGAGGGGTCTTTGTTCAATTACTACCACAGAAATGATCTACATTTAGTGATTGAAGCTTTAAAGTCTATGGATACTTCGTCTGGAGGCTTATTAACGGCTATCTACAAGCATTGGGATATCCCTGCTAACCCAAGTGTGGAGACTAGTAACTTGGTCGTCTTGAACCAAAGCTCCACCAAGAACCTTCGTGCCAAGGGTGAATCTTCTGCAATGAAGACATCTTTAGCTCCCATTACTTTTTCAGAAGCATGTTTGGTGAATAATCGGGTGGTTGATGAAAGAAAGTTAGATGAAAAATCTACAATTGACTGTTGTAATCATCCTGGCCAAGAGTTTCCAAAAGCTGGGAATCGCTTGGATTCAGCAACAACTATAGAAAGTCCTTGTGCTGTTTCAGAAGGATCAGCTGATACCACACAAGTTAGACCAGGCACCGAGAATGTTCAAATGAATGGGCTTTACGATTCCAATAGATCTGATGAGTCCTTGAATCAGTCAGGGATACCAGAAAAACATCATCCAGTTGGTGACAGTTCTTTGGTATCATCTAGCTTAGATGTGGAACATAAGAGGAAATTAAGATCTGTGGATGCTAGTTGTGCCCAATTGCCTGAAGATAAGGATACCTCTGATGTGCCTTTTGGAATAGACTATGTAAACTATTATAGCTTTGCCCGAACAGCCTCATTAATTGCACACGAGTTGATGAGTAAGTCACCTGAAAAGATAAATAAGAATATTGTATTGACTGAAGACGACATAATTTCAGAGCAAGTCAAGGCCATTATGAAGAAATCTACAAGCTTCTGCTGGCCAAGTATTCAAAACCTGCATGCAGCTGCCCAAAAGGAAAATTGTGGGTGGTGCTTTTCTTGCAAAGTTGCAAATGATGACAGGGATTGCTTGTTTAATTCTGTCATGAAGCCTGTTTGGGAAGTGTCTGAAAGTACTTTTGGTGGACTTCAGCCCAGCAAGATCCAGAATGAACATCTCAGGGATATCATCTGTCATATTCTCTCCCTTGAGGATCGATTACGCGGGATTTTGTTGGGTCCATGGTTGAATTTACAACAAACTGATCTTTGGCATAAGGAGCTTATGAAGACCGGTGATCTTCGTCCTGCTAAAAAGTTATTGCTTATTTTGGAATCCAATTTGCGGCCTTTTGCTTTTGCAGCAGATTGGTTAAAGCATGTGGATTCTATTGGTACCATGGGATCAGCTATTCATTTTGTGGCCAGTTTACGCACAAGGCATGGTATTGGGAAGAAAAGGGCTAGGTTTTCTGATGCTGAACCCAATCCATCTTCAAACAATGCAAGCGGTTTGGGAATGTATTGGTGGAGAGGTGGTAAGCTTTCCCGGCAGTTGTTTAATTGCAAGAGTTTGCCCCGCTCATTGGTTGCCAAGGCTGCTAGACAAGGGGGTTGCTCAAAGATTCCAGGCATTTTGTATCCTGAAAATTCAGATTTTGCTAGGCGAAGCAAATGCATTGCATGGCGGGCTGCTGTTGAGATGTCAACAAGTGTTGAGCAGCTTGCTGTACAGGTTAGAGAGCTTTATTCAAACATAAAGTGGCGTGATATTGAAAATAGCCATCCTCAATATGTCTTGGACAAGGAATCTAGAAAAGCAGTTAGACTGTTCAAGAAAGCAATTGTACGCAGGAAGTCCACTGAAGGGAAATCTGTGAAGTACCTTATTGATTTTGGGAAGAGAAGGGCTATTCCTGATGTTGTTACCAAACATGGTTCTGTGTTGGAAGAACCCTCAAGTGAGAGAAAAAAATATTGGCTGGAAGAATCTTATTTACCCATGCATCTTTTAAAGAATTTTGAGGAAAAAAGAATCATTCGGAAGTCCGATGTAAAGAAACTTGGGAAAACTATTGAGATTGGTAGAGTTAATAGGAAGGTTCCTCAACAAAGAGGATTTCCATATTTGTTTTCTAGACTGGAAAGATCTGATTGTCATCAGTGTGGGCACTGCAACAAAGATGTTCCTATCAGGGATGCTGTGAGCTGCCAATATTGCAAAGGATATTTTCATAAGAAGCATGTAAGGAAATGTAGTGGCACAAGGGCTACTAAATGCACATATTCATGTCACAGATGCGAGGGTGGGATGCGTGCAAAGACTAAAACTAATTCAAAAAGAAAGAGAGTTGACTCTAAACAGCAGAAGGTTGAATCACAGACATGTAAAAATACTCCCTCAGTTAGTAAGTCGGTGAGCCTTAAAGGCAATAAAAGGGCTTTGAGTAAGGCACGGAAGGCAAAATCTCAAACTAATAAGAAGATCGCACCAAGTGTACCACTTCGTCGTTCTACTAGGAAGGCCAAATCCTTGTACATGTACAATCAAATGAATGGAGGGCGGAAAAAAGGAATTCAGAGTAAAAAGAAAGTTGGACGTAAAAAGGGGAAGCAAAATAAATCAAAGAAGGCAAATAATCAGAAGCCGAAAGAAACTACTGCTCAGCAAGAGAAGTGTATGCCAACTACTGTTTGTAAGAAAAGAACAAACGTTAGTAGCAGCTACTGGCATAATGGTCTTTGGTTGTCTAGAAAGCCAAATGATGAACGGGTAGTGTTGTTTCGGGAAAAAAAGCATGTTTTCTCCTCTGAGGGTTTTTCTGCTGCCACTGATAATCCTAAATGTGGCATTTGTTCTGGAGATGGACCCGAATTACATTATATTGCTTGTGACATATGTGGAGATTGGTATCATGGGGATGCTGTTGGGCTCACTGTAGAGAATTCCAGACAATTAATTGGATTTAAGTGTCATGTTTGTCTTCAAAGGCATGCTCCGATCTGCCCCCATATGACATGTAAAGCACTGTCTCTCACTGGAAACAGCACTAAAGAGTGTGCTGAGGAACTATCAAATTCTGTATCTCTCCAGTTTCCAACTGAGGTATGA 5163 0.4191 MMEFVGKIVKKEVKGVGFVTGTVKSYDPSSSFVEILYDNGDSEELESNEVVLLLQQAQPELAKPKTRVGRKPKKRRRVEKKAGAGDSSGNANGNLVLEVSEIRDNSEVNGELGLGIEEKLGNGNANANGSVESIVGDGTLGREIGVEGDLNLNKDVAVNGSCLRDELDLNSGINLNEDLNLNDGCGLLTFDGTEVGLKRRDCIDLNLDVNNDDDVSMNGGSLGGRKLQRECNFDLNVEVCEDIKETRGEVANGNGIYEANAILGKMGQLQGDMTNLNQRSLEVDDVRSDLNEVSNDFTPEVDHVSANHAATDASLCSIEGEEGNDNRGDVAAVGSLQVSDVVSLETQQMDSPCEAGLVVTHEDQEETGSLSKQGRGRRKRRKIADELNNTPETGLRRSSRRALARKHASSVIVSLEMDDPMVSVETSAMAEEKPVTVISGHEQSKICQAKLQLPPSSQNLNLDDVPVLEVFSIYACLRSFSTLLFLSPFELEDLVAALKSKTPSILFDSIHVSILETLRKHLEYLSNEGIQSASDCLRNLNWDFLDIVTWPIFMAEYLLIHGSGFKTSFNLNYSNFTADYYKQPVNVKVGILQYLCDDMIEAEAIRSELNRRSLVTENSVGSDQNMYFDTCKKRRAGTDVSGGSCLTEEIADDTDWNSDDCYLCKMDGNLICCDGCPAAFHSKCVGIASDNLPEGDWYCPECAIGTHRAWMKSRRSLRGADLIGSDIHGRLYFSSYGYLLVSDSSDEGSLFNYYHRNDLHLVIEALKSMDTSSGGLLTAIYKHWDIPANPSVETSNLVVLNQSSTKNLRAKGESSAMKTSLAPITFSEACLVNNRVVDERKLDEKSTIDCCNHPGQEFPKAGNRLDSATTIESPCAVSEGSADTTQVRPGTENVQMNGLYDSNRSDESLNQSGIPEKHHPVGDSSLVSSSLDVEHKRKLRSVDASCAQLPEDKDTSDVPFGIDYVNYYSFARTASLIAHELMSKSPEKINKNIVLTEDDIISEQVKAIMKKSTSFCWPSIQNLHAAAQKENCGWCFSCKVANDDRDCLFNSVMKPVWEVSESTFGGLQPSKIQNEHLRDIICHILSLEDRLRGILLGPWLNLQQTDLWHKELMKTGDLRPAKKLLLILESNLRPFAFAADWLKHVDSIGTMGSAIHFVASLRTRHGIGKKRARFSDAEPNPSSNNASGLGMYWWRGGKLSRQLFNCKSLPRSLVAKAARQGGCSKIPGILYPENSDFARRSKCIAWRAAVEMSTSVEQLAVQVRELYSNIKWRDIENSHPQYVLDKESRKAVRLFKKAIVRRKSTEGKSVKYLIDFGKRRAIPDVVTKHGSVLEEPSSERKKYWLEESYLPMHLLKNFEEKRIIRKSDVKKLGKTIEIGRVNRKVPQQRGFPYLFSRLERSDCHQCGHCNKDVPIRDAVSCQYCKGYFHKKHVRKCSGTRATKCTYSCHRCEGGMRAKTKTNSKRKRVDSKQQKVESQTCKNTPSVSKSVSLKGNKRALSKARKAKSQTNKKIAPSVPLRRSTRKAKSLYMYNQMNGGRKKGIQSKKKVGRKKGKQNKSKKANNQKPKETTAQQEKCMPTTVCKKRTNVSSSYWHNGLWLSRKPNDERVVLFREKKHVFSSEGFSAATDNPKCGICSGDGPELHYIACDICGDWYHGDAVGLTVENSRQLIGFKCHVCLQRHAPICPHMTCKALSLTGNSTKECAEELSNSVSLQFPTEV 1720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g01109 1720 MobiDBLite consensus disorder prediction 362 398 - -
Aip03g01109 1720 MobiDBLite consensus disorder prediction 1458 1574 - -
Aip03g01109 1720 MobiDBLite consensus disorder prediction 899 929 - -
Aip03g01109 1720 PANTHER PHD-FINGER AND DNA BINDING DOMAIN-CONTAINING PROTEIN 2 1695 - -
Aip03g01109 1720 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1625 1686 IPR013083 -
Aip03g01109 1720 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 648 723 IPR013083 -
Aip03g01109 1720 ProSitePatterns Zinc finger PHD-type signature. 661 702 IPR019786 -
Aip03g01109 1720 ProSiteProfiles DDT domain profile. 464 524 IPR018501 -
Aip03g01109 1720 Pfam PHD-finger 661 703 IPR019787 -
Aip03g01109 1720 CDD PHD2_CHD_II 661 702 - -
Aip03g01109 1720 Pfam DDT domain 469 520 IPR018501 -
Aip03g01109 1720 SUPERFAMILY FYVE/PHD zinc finger 648 710 IPR011011 -
Aip03g01109 1720 MobiDBLite consensus disorder prediction 62 92 - -
Aip03g01109 1720 MobiDBLite consensus disorder prediction 1475 1494 - -
Aip03g01109 1720 MobiDBLite consensus disorder prediction 1541 1561 - -
Aip03g01109 1720 SUPERFAMILY FYVE/PHD zinc finger 1623 1683 IPR011011 -
Aip03g01109 1720 SMART testlast3 464 524 IPR018501 -
Aip03g01109 1720 ProSiteProfiles Zinc finger PHD-type profile. 658 705 IPR019787 -
Aip03g01109 1720 PANTHER PHD FINGER FAMILY PROTEIN 2 1695 - -
Aip03g01109 1720 SMART PHD_3 1632 1679 IPR001965 -
Aip03g01109 1720 SMART PHD_3 660 703 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g01109 Aip-Chr3 10823979 10835955 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g01109 2 1689 PHD Transcription Factor Family AT5G12400 40.092 0.0 1074
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Aip03g01109 DDT 2e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g01109 - - gmx:100800973 2124.36