Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g01107 ATGCAAGAAGAAGGTTCATCTTCTGTAACTTCCTCACCCCTGCAATCCGTTTCAACCATGTCACTTTCACCTAGCTTGGGATCTCCACACCCCATGCCTAAGGAACTGAGATCTGAGGAAAGGGGTTTGTGCTTAATCCATTTGCTTCTCACTTGTGGAAATCATGTAGCTGCTGGTAATATTGAAACTGCAAATGTTTTACTTGGGCAAAGTTCCATGCTTGCCTCTCCAGAGGGCGATACTATGCAGCGGATCGCGGCCTATTTTACCGAAGCACTTGCTGATCGGATACTTAAGGCATGGCCCGGGCTCCATAGAGCCCTCAACTCTACTAGAATGGTCATGGTTTCTGAAGAAGTTCTCACTCGAAAGCTTTTTTATGAAATTTTTCCTTTTATGAAGATAGCATTTGTTCTGACAAATCAAGCTATCATTGAGGCGATGAAAGGCGAAAAAATGATTCATATAATTGATCTTAATGCTATTGAATCTGCTCAGTGGCTTGCACTCCTCCAAATTCTGAGTAAACGTCCCGAAGGTCCACCTCATTTGAGAATCACTGGTGTTCATCAAAAGAAAGAGATTCTAGACCAAATAGCTTATAGACTGGTTGAAGAAGCAGAGAAGTTGGATATTCCATTCCAGTTTAACCCTGTAGTCAGCAAATTAGAGAGCTTAGATTTTGAAAAATTTCGCGTGAAAAGTGGGGAGGCACTCGCTATAACTTCCATGCTCCAATTGCATTCACttttggcatgggacaacgaagctgcacagagaagaaatcctcaattagctagaacctcaaatgcaattcaccggaaaagaaaacagcctatgttccaaagctcatccagtGATTTGCCTGAGAATACGCCTAGTCCTGACTCATCCTCATCGTCTCCAGCATCGTTAACTACTTCAAATTCAAAGCATACGGAGAGCTTTCTTAATGCATTATGCGGATTATCACCAAAGGTTATGGTTGTAACCGAACAGGACTCCAATCACAATGGTTTGACTCTTATGGACAGGCTACTAGAAGCTCTATACTCTTATGCTGCACTATTTGATTGCTTGGAGTGCACTCTGCCAAGGACATCATTGGAGAGATTAAGGCTTGAGAAGATGCTTTTCGGTGAGGAAATCAAGAACATTGTCGCGTGCGAGGGATTGGAACGAAGGGAAAGGCACGAGAGGCTGGATAAGTGGATCCACAGATTTTATTTGGCTGGATTTGTTAACATGCCCTTAAGCTATTTTGGTACGCTGCAAGCAAAGAGGTTCTTGCAGAGCTATAGTTGTGACGGTTATAGAATGAGAGAGGAAAATGGTTGTGTATTAATTGGTTGGCAAGATAGGCCCTTGTTTTCAGTATCAGCTTGGAGATCTAGGAAGTAA 1401 0.3933 MQEEGSSSVTSSPLQSVSTMSLSPSLGSPHPMPKELRSEERGLCLIHLLLTCGNHVAAGNIETANVLLGQSSMLASPEGDTMQRIAAYFTEALADRILKAWPGLHRALNSTRMVMVSEEVLTRKLFYEIFPFMKIAFVLTNQAIIEAMKGEKMIHIIDLNAIESAQWLALLQILSKRPEGPPHLRITGVHQKKEILDQIAYRLVEEAEKLDIPFQFNPVVSKLESLDFEKFRVKSGEALAITSMLQLHSLLAWDNEAAQRRNPQLARTSNAIHRKRKQPMFQSSSSDLPENTPSPDSSSSSPASLTTSNSKHTESFLNALCGLSPKVMVVTEQDSNHNGLTLMDRLLEALYSYAALFDCLECTLPRTSLERLRLEKMLFGEEIKNIVACEGLERRERHERLDKWIHRFYLAGFVNMPLSYFGTLQAKRFLQSYSCDGYRMREENGCVLIGWQDRPLFSVSAWRSRK 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g01107 466 PANTHER SCARECROW-LIKE PROTEIN 3 2 465 IPR030008 GO:0003700|GO:0005634|GO:0009739
Aip03g01107 466 ProSiteProfiles GRAS family profile. 36 463 IPR005202 -
Aip03g01107 466 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 2 465 IPR005202 -
Aip03g01107 466 Pfam GRAS domain family 45 463 IPR005202 -
Aip03g01107 466 MobiDBLite consensus disorder prediction 1 26 - -
Aip03g01107 466 MobiDBLite consensus disorder prediction 262 309 - -
Aip03g01107 466 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g01107 Aip-Chr3 10803248 10805491 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g01107 2 466 GRAS Transcription Factor Family AT1G50420 61.216 0.0 587
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Aip03g01107 GRAS 6.4e-131 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g01107 - - gmx:100814131 689.493